BAC Information

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BAC

Clone NameMSMg01-210L03
ChromosomeX (Build37)
Map Location 42,674,242 - 42,674,529
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC637141, Wdr40c, Wdr40b, LOC665585, 1110059M19Rik
Downstream geneLOC100040038, EG385346, LOC100040075
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-210L03.T7 (MSMg01no210_l03.b1)MSMg01-210L03.TJ (MSMg01no210_l03.g1)
ACCAG392712AG392713
length727751
length of high quality
(start - end)
370 (46 - 415)288 (77 - 364)
definitionCHROMAT_FILE: MSMg01no210_l03.b1 PHD_FILE: MSMg01no210_l03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:35:20 2005CHROMAT_FILE: MSMg01no210_l03.g1 PHD_FILE: MSMg01no210_l03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:35:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTCAGCTCTGAGCCCTGTTTTTTAATGGGGTATTTGATTTT
CTGGAGTGCACCTTCTTGAGTTCTTTATATATATTAGATATTAGTCCCCT
ATCTGATTTAGGATAGGTAAAGATTCTTTCCCAATCTGTTGGTGGTCTTT
TTGTCTTATTGATGGTGTCTTTTGCCTTGCAGAAGCTTTGCAGTTTCATG
AGGTCCTATTTGTCTATTCTTGATCTTACAGCGCAAGCCATTGCTGTTCT
ATTTACAAATTTTTCCTCTGTGCCCATATCTTCAAGGCTTTACCCCACTT
TATCCTCTATAAGTTTCAGTGTCTCTGGATTCATGTGAAGTTCCTTGATC
AACTTAGATTTTCCCTCACCCCAAGGAGATTGGAATGGATCAATTCACAT
TCTTCTACATGATTACAACCAGCTGTGCCAGCACCATTCGTTGAAAATGC
TGTCCTTCTTCCCCTGGATGGTTTTAGTTCCCTTTTCTAAGATCAAGTGT
TTTTACGTGCGTTGCGTTTATTTTTGGGTCTTCCATTCCGTCCCAATTGT
TCATTTGTCTGTCTTTTCTTTTCCCTTATCGCTTCCTAATTCACCTATCC
CTCTATCTCTTCTTCTCCTTCTTATATCCTTTTTCTTATTTAGTTACTTA
ACCCTCCTCCCATTTCTTTTTTTTTCC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAACCCAATGTTTGCGAAAAACCAA
ATAGGTATAGTATTTTAATGTTCTCCAATATAGAGCACATATGAAATCAG
GTTTTCTACATCAGCTTTGTGTGAACACACAAACAAGATGAGAACTCTGC
AAGGACAGAGAATCACAGGCTAATACCTCTGATGAGTATGGCGTTAGTCA
CTCTTCTCATTTCACTGACAAAATATCTGACAAGCAGCAACTCAAAGAAT
GAGAGGTTTGTTTTGATTAATACTTTAAGTACAAAATCCATCATGAGAGG
GAAAATATAGTGGAGGTAATGTAAGCCACCTTGCCNCATTACATATGAAG
CTAGGTAGCAGAGGAAGATCCCCCCCAAAACAAGTTTCCCTTTTATTGAG
TACAGAAGCATAACAAATAAAAGTGATGTCTTCTAGAATATCTATTTGAA
AAAATACTCATTGATCTCTGACATACTATGGATGTATGGATTCACGCTTT
ACCACAATCTATCACCCTTGCTCCTTACATTATACTATTGTGCCTCGTTT
CTTCCTATGATTTCTACGCATTACCCACCACCTCACCTTACCTGGCGAAT
TTCTTCCTTTCTTCTCAACCCCATTCCCCCTCCCCCTTCCTCTCTTCCTT
CTCCCCCTTTTTTTCCAAACCCTCCTCTTTCTACCCCGCCTATAATTATT
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no210_l03.g1 MSMg01no210_l03.g1 CHROMAT_FILE:
MSMg01no210_l03.g1 PHD_FILE: MSMg01no210_l03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:35:20 2005
         (288 letters)



>mm_chrX_42674042_42674729
          Length = 688

 Score =  534 bits (276), Expect = e-156
 Identities = 285/288 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacccaatgtttgcgaaaaaccaaataggtatagtattttaatgttctccaatatagagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacccaatgtttgcgaaaaaccaaataggtatagtattttaatgttctccaatatagagc 260

                                                                       
Query: 61  acatatgaaatcaggttttctacatcagctttgtgtgaacacacaaacaagatgagaact 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 acatatgaaatcaggttttctacatcagcattgtgtgaacacacaaacaagatgagaact 320

                                                                       
Query: 121 ctgcaaggacagagaatcacaggctaatacctctgatgagtatggcgttagtcactcttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgcaaggacagagaatcacaggctaatacctctgatgagtatggcgttagtcactcttc 380

                                                                       
Query: 181 tcatttcactgacaaaatatctgacaagcagcaactcaaagaatgagaggtttgttttga 240
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 381 tcatttcactgacaaaatatctgacaagcagcaactcaaagaaggagaggtttgttttga 440

                                                           
Query: 241 ttaatactttaagtacaaaatccatcatgagagggaaaatatagtgga 288
           ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 ttaatactttaagtacaaaatccatcatgagagggaaaatacagtgga 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)