BAC Information

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BAC

Clone NameMSMg01-212A14
ChromosomeX (Build37)
Map Location 17,018,070 - 17,018,349
singlet/doubletsinglet
Overlap genenone
Upstream geneCypt6, LOC100038939, LOC668993, Maoa, Maob, Ndph, LOC100043063, Efhc2
Downstream geneFundc1, EG278181, EG668994, EG436196, EG331391, Dusp21, LOC100043951, Utx, LOC100043952, 4930578C19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-212A14.T7 (MSMg01no212_a14.b1)MSMg01-212A14.TJ (MSMg01no212_a14.g1)
ACCAG393541AG393542
length778690
length of high quality
(start - end)
183 (41 - 223)285 (70 - 354)
definitionCHROMAT_FILE: MSMg01no212_a14.b1 PHD_FILE: MSMg01no212_a14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:37:41 2005CHROMAT_FILE: MSMg01no212_a14.g1 PHD_FILE: MSMg01no212_a14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:37:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TGAATGTTCACAACATGAAGAAATGTCTGAAGTGGTGGATATGCCAATTG
CATGATATGATTATTATCCATTAGGTGTATGTATTGGAATACCATGTGAT
TTGTCCTGAACAGATCCAATTATTATCTGACAATTTAAAAATACATTTAA
AGCAGTTATACAGAGGCATTTAAGGAAGAATACCNGGTAATAATGNNTAT
ATGAATAATGGTAAGGAAAGTAGAAGTCTGGTCCATGGTTTATTGGTTAA
ATTGGCCATTTTTCAAAAAATCCTTTTTGGGTTGAATCTCAAGGGACCAA
AGGGGAGAATGGTAATAGGCCCATTTTTTTNCATTTNTCCTTCTCTTTTT
TTTTATTTTCTCCCCCCACNNCGAGCGCGGGCAAAAAAACCCGCGACCAC
TATTTTTTCTACCCCCCCCCTTTATTCTCCCACCCCTTTTTTCTTCCTAC
GTTTACTCTTTCTTATTTCCTTTTTTACCCCATGCACGTACTCTTTTTCT
ACTCTCTCTTACCCACCTTTCTCCCTCTTTTATAAAATTTAAACAATATT
AACCACCCTCCGGCGCGACGATCAGGACTATTCTCTTATATTTCTATCCC
TTTCTTTTCCCCCCCCCCCTTTCTCTTATCTATCTCTCCCCCCTCTCCGC
TTTCCCCATATTTTAACTTACCGACCTTACTTGTGACATGAGTCTATATT
ACTTATCTTCCTTCGTTCTTCGCCTATT
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACTGTGTTAGTTTCCCAGCTGTTTACAAATC
TATAGTTGTAATGTAAAAAGTTTTAAAATTGTTAAATGAGCTGAAATGAA
AATTGATGAGATAAATTGATGAGCTGAATTTAAGAACTTAGTTAAAGAAA
ATACAAACTAACCCCAAAGAGTATAGAAGAATGGAAATAATAAAGCTAAG
TAATAAAAGGCAGACAACAGAGTAAATTAAAAAGCTAAGAATTAATTTAA
TATAATGTATTATGGAAGGGCATAAATACTGGCAAACTCTTGTAATTCTA
GTATTCTTTATACCCCCCCACCCCCAGACAGAGGATTCAAAATGTTCCTT
GGCAACCTAACCCAAAACCAGCATGGCCTGCATAAGATCCTGCCTCAAAA
CAAAACATTCAAACAAACAAAAAAAACCCAGATAATTCTATAAAAATTAT
GATGTCAAAATGTTAAATTTCGAGTAGCAAAATATGGAAGAAATATAACC
AACCCAACTTAACTGAAATATAGAAAATTTGGGTAGTCCTATAAGCCCTG
AGGGGGTAAATAACTATATGAACATTATACCCATGTGGTTTGTAGTGTTT
CACTAAACATTCAAAAAAGAAATCCATCCAATGTTGTAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no212_a14.g1 MSMg01no212_a14.g1 CHROMAT_FILE:
MSMg01no212_a14.g1 PHD_FILE: MSMg01no212_a14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:37:41 2005
         (285 letters)



>mm_chrX_17017689_17018373
          Length = 685

 Score =  534 bits (276), Expect = e-156
 Identities = 280/282 (99%), Gaps = 2/282 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgtgttagtttcccagctgtttacaaatctatagttgtaatgtaaaaagttttaaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 actgtgttagtttcccagctgtttacaaatctatagttgtaatgtaaaaagttttaaaat 602

                                                                       
Query: 61  tgttaaatgagctgaaatgaaaattgatgagataaattgatgagctgaatttaagaactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tgttaaatgagctgaaatgaaaattgatgagataaattgatgagctgaatttaagaactt 542

                                                                       
Query: 121 agttaaagaaaatacaaactaaccccaaagagtatagaagaatggaaataataaagctaa 180
           ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||
Sbjct: 541 agttaaagaaaatacaaactaacccc--agagtatagaagaatggaaataataaagctaa 484

                                                                       
Query: 181 gtaataaaaggcagacaacagagtaaattaaaaagctaagaattaatttaatataatgta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 gtaataaaaggcagacaacagagtaaattaaaaagctaagaattaatttaatataatgta 424

                                                     
Query: 241 ttatggaagggcataaatactggcaaactcttgtaattctag 282
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ttatggaagggcataaatactggcaaactcttgtaattctag 382


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)