Query= MSMg01no212_g20.b1 MSMg01no212_g20.b1 CHROMAT_FILE:
MSMg01no212_g20.b1 PHD_FILE: MSMg01no212_g20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:38:11 2005
(662 letters)
>mm_chrX_40774117_40775175
Length = 1059
Score = 1226 bits (634), Expect = 0.0
Identities = 651/658 (98%), Gaps = 3/658 (0%)
Strand = Plus / Minus
Query: 5 gaattcaaatatggctatattaaagaaactcccattttcacttttttgggaaatagttta 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 gaattcaaatatggctatattaaagaaactcccattttcacttttttgggaaatagttta 800
Query: 65 gtgtttttagctccctatatgaatgagggtttgtatattggccaaaataaaagtaaatta 124
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 gtgtttttagctgcctatatgaatgagggtttgtatattggccaaaataaaagtaaatta 740
Query: 125 ctctccatttgcatacttaagggaaaaatcttattactggctaaggtcacagagaaaatt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 ctctccatttgcatacttaagggaaaaatcttattactggctaaggtcacagagaaaatt 680
Query: 185 tcccagttgcatggtttttgtctaattggtggattctaagtacaactattacctctaatg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tcccagttgcatggtttttgtctaattggtggattctaagtacaactattacctctaatg 620
Query: 245 tttctatctggtttagacacctgtcaaagagaaggtgccagattaaatggacaattggtt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tttctatctggtttagacacctgtcaaagagaaggtgccagattaaatggacaattggtt 560
Query: 305 tattagatatcaccacccctgcatcccagctgcatgtagacatttaaagaaaattcttcc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tattagatatcaccacccctgcatcccagctgcatgtagacatttaaagaaaattcttcc 500
Query: 365 attttcccgctaaaatagaaaaaaaaaatactacagatggcccatctcaataatccacat 424
||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 499 atttttcagctaaaatagaaaaaaa---tactacagatggcccatctcaataatccacat 443
Query: 425 tttttcaggtacatttaaaattaaatgtcctaagagatgattaattcaggaaagttattg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tttttcaggtacatttaaaattaaatgtcctaagagatgattaattcaggaaagttattg 383
Query: 485 ataatgaactcatcttatgctacacatcctttgcacccatgatgatgccttattaaaggt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ataatgaactcatcttatgctacacatcctttgcacccatgatgatgccttattaaaggt 323
Query: 545 gtctcaatcttgctaattaccacctgtgtttaaatatagaggtgtataaatacactacaa 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gtctcaatcttgctaattaccacctgtgtttaaatatagaggtgtataaatacactacaa 263
Query: 605 ctgcacagtggctggaagcattctaaacccgaaattttggctctattcctagctaact 662
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 262 ctgcacagtggctggaagcattctaaacctgaaattttggctctattcctagctaact 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1059
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1049
Effective search space: 683948
Effective search space used: 683948
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no212_g20.g1 MSMg01no212_g20.g1 CHROMAT_FILE:
MSMg01no212_g20.g1 PHD_FILE: MSMg01no212_g20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:38:11 2005
(283 letters)
>mm_chrX_40657998_40658680
Length = 683
Score = 538 bits (278), Expect = e-157
Identities = 281/282 (99%)
Strand = Plus / Plus
Query: 1 cacgtattttaatcaattgttgaattatgtttttcatgcatataaatgtttttttaaaca 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 cacgtattttaatcaattgttgaattatgttttccatgcatataaatgtttttttaaaca 260
Query: 61 catgggaaaactttctagaatggggaatcttcaataatctacaaagcaaaaacatgtata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catgggaaaactttctagaatggggaatcttcaataatctacaaagcaaaaacatgtata 320
Query: 121 ctcaactaatttgtcaatttaaagatctcaagagagagaaaatattcaatcaagtaaaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcaactaatttgtcaatttaaagatctcaagagagagaaaatattcaatcaagtaaaag 380
Query: 181 aaagggaaaggccatagtaaactcgataaggtgttcatgctttataagattattactatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagggaaaggccatagtaaactcgataaggtgttcatgctttataagattattactatt 440
Query: 241 atattgatttccctctgcagttaatgctttgcagactttata 282
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atattgatttccctctgcagttaatgctttgcagactttata 482
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space: 184676
Effective search space used: 184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
