BAC Information

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BAC

Clone NameMSMg01-213A03
ChromosomeX (Build37)
Map Location 84,691,536 - 84,691,821
singlet/doubletsinglet
Overlap genenone
Upstream geneIl1rapl1
Downstream geneLOC667876, EG667883
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-213A03.T7 (MSMg01no213_a03.b1)MSMg01-213A03.TJ (MSMg01no213_a03.g1)
ACCAG394152AG394153
length733735
length of high quality
(start - end)
381 (26 - 406)288 (66 - 353)
definitionCHROMAT_FILE: MSMg01no213_a03.b1 PHD_FILE: MSMg01no213_a03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:56 2005CHROMAT_FILE: MSMg01no213_a03.g1 PHD_FILE: MSMg01no213_a03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTAAACGACTCCTATAGGTCGAGGATCCGCGGAATTCTCACCTGAGGAAC
ACCGAATGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATC
AGGGATATGCAAATCAAAACAACCCTAAGATTCCACCTCACACCAGTCAG
AATGGCTAAGATAAAAAATTCAGGTGACAGCAGATGCTGGCGAGGACGTG
GAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAG
CCATTCTGGAAATCAGTCTGGCAGTTCCTTAGAAAATTGGACATGGTACT
ACCAGAGGATCCAGCAATACCTCTCCTGGGCATATATCAAGAAGATGTCC
CAACAGGTAAGAAGGACACATGCTCCACTATGTTCATATCAGCCTTATTT
ATAACAGCCAGAAGCTGGAAAGAACCCAGATGTCCCTCAACAGAGGAATG
GATACAGAANATGTGGTACATTTACACAATGGAGTACTACTCAGCTATTA
AAAAGAATGAATTTATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGC
ATCATTCTGAATGAGGTAACACAATTCACAAAGGAACTCTCACAATATGT
ACTCACTGATTAGTGGATAATTAACCCAAAACTTAAGGATTTGCCAGAAT
ATAGGATTCAATTTTGCTTAAATGCTTGAAAACTCCAGGATGAATGAATA
ACCAATATTGGGTGACCCTTTTGCCCCTTTCTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAACTTTACAAAGAGAGATAAAATGTCACCATTATT
TATTTCCATCATTTCCGCATACTTGTTTTGTGTAAAACAGAAAGATGTAA
ATAGATAAACTTAGCCACTTAACACACAGCCTGTAAAATAGAAACCTGAT
TTACTAACATTTCTTACCAGTTTTATTTCTCTGGACTCTAATACTGCAGT
ATTTTTTCAGGCAAAATTTGCCAGACATTATTTCTGGTTATATGGTTGTA
TATTTGAATACATATACATTTCAGGAACATATTGTGCTTTCTCTTCTAGG
ATATTATTGTTAAGGACATGCATACGCTTTTCTCATTTTCCCTAAGTATT
TCAATAAACCTTCCCCATTTTACATCTTATAAAATGTAACTCTTTGCCCC
TTGTGAAAGTCTTACTTTTCATATTTCCATTTAATTAATAACTTGTCGCA
AGAATAATTAACCAATATGACCACATAATATCAAAAAAATTTATGCTTAT
TTAACAAATCATTCATCTATCTGAGAACTCCCTCTTATTGGACAAAAACA
GAAAGTACCCCAAAAACGCGATTTTTTCTATTTTCGAATGATCTCACACC
CTGAAAAATGCCTATCTTTTCGGGGTTTTCTTTTTAGTCTACCGCCCTTA
TGTAAACTCGAATTTTAATTTTCCCACCTTTCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no213_a03.g1 MSMg01no213_a03.g1 CHROMAT_FILE:
MSMg01no213_a03.g1 PHD_FILE: MSMg01no213_a03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:38:56 2005
         (288 letters)



>mm_chrX_84691336_84692021
          Length = 686

 Score =  511 bits (264), Expect = e-149
 Identities = 282/288 (97%), Gaps = 2/288 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aactttacaaagagagataaaatgtcaccattatttatttccatcatttccgcatacttg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||
Sbjct: 201 aactttacaaagagagataaaatgtcaccattatttatttccatcatttatg-atacttg 259

                                                                       
Query: 61  ttttgtgtaaaacagaaagatgtaaatagataaacttagccacttaacacacagcctgta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ttttgtgtaaaacagaaagatgtaaatagataaacttagccacttaacacacagcctgta 319

                                                                       
Query: 121 aaatagaaacctgatttactaacatttcttaccagttttatttctctggactctaatact 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 320 aaatagaaacctgatttactaacatttcttaccagttatatttctctggactctaatact 379

                                                                       
Query: 181 gcagtattttttcaggcaaaatttgccagacattatttctggttatatggttgtatattt 240
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| 
Sbjct: 380 gcagtattttttcaggcaaaatttgccagacattatttccggttatatggttgtatatt- 438

                                                           
Query: 241 gaatacatatacatttcaggaacatattgtgctttctcttctaggata 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gaatacatatacatttcaggaacatattgtgctttctcttctaggata 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 686
Length adjustment: 9
Effective length of query: 279
Effective length of database: 677
Effective search space:   188883
Effective search space used:   188883
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)