BAC Information

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BAC

Clone NameMSMg01-213E20
ChromosomeX (Build37)
Map Location 95,177,846 - 95,177,997
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668238, Pgr15l, Eda2r, LOC668244
Downstream geneAr, LOC100042324, Ophn1, Yipf6, LOC100042932
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-213E20.T7 (MSMg01no213_e20.b1)MSMg01-213E20.TJ (MSMg01no213_e20.g1)
ACCAG394343AG394344
length718742
length of high quality
(start - end)
316 (39 - 354)299 (67 - 365)
definitionCHROMAT_FILE: MSMg01no213_e20.b1 PHD_FILE: MSMg01no213_e20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:17 2005CHROMAT_FILE: MSMg01no213_e20.g1 PHD_FILE: MSMg01no213_e20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:18 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTC
ACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGTTCAACAT
CCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTC
ACACCAGTCAGAATGGCTAAGATGAAAAATTCAGGTGACAGCAGATGCTG
GCTTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCA
GGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTG
GACATTGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATATATCC
AGAATATGTTCCCAACTGCCCCCAAGGACACATGCTCCACTATGTTCATA
GCAGCCTTATTCACCCCACCCAGAAGCTGGAAAGAACCCAGATGCCCCTC
AACAGAGGAATGGATATAGAAAATGTGGTACATCTACACAATGGAGTACT
ACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGATG
GACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGAAACTC
ACACAATATGTACTCACTGATAAGTGGATATTAGCCCCAAACCTAGGATA
CCCAAGATATTAGATACAATTTGCTAAACACATGAAACTCAAGAAGAATG
AAGACTGAAGTGTGGACN
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCAGTCCTAGCAACTATCATGCCCTGCCTTGTTCT
TATTTCTTTATCTTCTTCCTCATCTCACTGCTAACTCAAAGGGGAATTTG
AAATTAAGTTGTGACATTTTCTCCATGAAAGTCCTCTTGTTTCACCTCTC
ATAAGATACAGACAATTCTGTGCAGCTAATTAAGCCGACCAAGTCCCTTT
TCTCCATAGGGACTTGGTGTGCAATGGTTGCAAACAGCAGCTTCCTTGGT
GTGGTGTATGTAGCCTATTGTCTATATAGGTTGCTTCAAGGGACCTTGGA
GACATTTCTGGCAGTTGGCAATCAAGCCTCTGATCACAATGCTGTCCCTG
ATCTAGGCCCCACACCGCCATTCATGGTGCCTTTGGGAAGCCCCAGGGCA
CATTGGCCAGGTCATCATGTCCATCCGAACCAAGTTGCAGAATAAGGAAC
AGGTGATGGAGATTGTGACTCTGCGCAGAGCCTAGTTCAAGTTCCCTGGA
TGCCAGAATATCCACATTCTCAAGATGTGTGGCTTCTCCATGTTTACCGC
ACAAGTATTTGATCACTTGGTTGTTAGAGAAAAGAATATATTCATGTTGG
CTGTGGATGCTAATATAATCCAATTCCTGAGACATCTGAACTAAATGATC
TATCTCTTATTAATATGATTGTTTATCAAATCACCCTCTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no213_e20.g1 MSMg01no213_e20.g1 CHROMAT_FILE:
MSMg01no213_e20.g1 PHD_FILE: MSMg01no213_e20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:18 2005
         (299 letters)



>mm_chrX_95177646_95178344
          Length = 699

 Score =  294 bits (152), Expect = 4e-84
 Identities = 152/152 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagtcctagcaactatcatgccctgccttgttcttatttctttatcttcttcctcatctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 cagtcctagcaactatcatgccctgccttgttcttatttctttatcttcttcctcatctc 293

                                                                       
Query: 61  actgctaactcaaaggggaatttgaaattaagttgtgacattttctccatgaaagtcctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 actgctaactcaaaggggaatttgaaattaagttgtgacattttctccatgaaagtcctc 233

                                           
Query: 121 ttgtttcacctctcataagatacagacaattc 152
           ||||||||||||||||||||||||||||||||
Sbjct: 232 ttgtttcacctctcataagatacagacaattc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 699
Length adjustment: 9
Effective length of query: 290
Effective length of database: 690
Effective search space:   200100
Effective search space used:   200100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)