BAC Information

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BAC

Clone NameMSMg01-215K11
ChromosomeX (Build37)
Map Location 161,757,392 - 161,757,712
singlet/doubletsinglet
Overlap geneGlra2
Upstream genePir, Figf, Piga, Asb11, Asb9, Mospd2, Fancb, LOC627045
Downstream geneLOC100040753, Gemin8, Gpm6b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-215K11.T7 (MSMg01no215_k11.b1)MSMg01-215K11.TJ (MSMg01no215_k11.g1)
ACCAG395824AG395825
length695695
length of high quality
(start - end)		321 (375 - 695)621 (75 - 695)
definitionCHROMAT_FILE: MSMg01no215_k11.b1 PHD_FILE: MSMg01no215_k11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:42:23 2005CHROMAT_FILE: MSMg01no215_k11.g1 PHD_FILE: MSMg01no215_k11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:42:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTGTGAGGAAAGTCATCGTGCAATGGATAATTCATATGATTTCATAAT
TTTTACCAAAGTATCTGACATGATATTTTCTGTAGTTCCTAATAAAGTGG
AGATCTCAGAATAGCCAAGGTTTTGGTACATTTTTAGGGTGCCTGAGGGC
TTTTACTACTTTCTGCAGACTCATCATGCCTCACACTTAGAGGCATCCTA
TCCTTCATTTTTAGAATTCACCATAACATCCAATATCCATGTGATCAAAT
ACATGATCAGGGTTGGCTACTTTATTCCTAACTGAGAAAGGTGCCATTTC
ACCTGTCTCTTCTGGATAGGACCTGATATTCATATCTGAACTTCAACTGA
ACTGTGCTACAATCTCCAAAAGTCAAAGCCTGAAGATCTTTGGTTTCATG
GAAGAGGATCAACCCAGCTCTAACTATATATGAAATGTTTCTTTAGCTAC
TAACTCACTGGACATTTCAGAAAGCTATATTGAGTACAAATGTAGGTTTT
AATGTCACACATTCCAGTTTCAAACATAGATCTCTAGATATGAGAAAAAT
TAGTTGGCATGGCAAGCACAAAGATGAGGAAGAAATATTACTCCCTAATA
TTATCTAATCCAAATTCTATACCCCAGACTGCTGCAGTGCAATCT

CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGTGCTGAGGATAATGTTGAGAGAGG
GGAACGCTGACCCAATTTGGTAAGAATGTAAACTCACGGGGCTACAGTGA
AAGTTGGTATAGAGGTTCCTCAAAATAAATAAATAAATAAATAAATAAAT
AAATAAATAAATAAATAAATAAATAAATAAATAAATAAAACTAAAACTAC
CATATCACCTAGATATGCCAGTAGGTATATCAGTACTGGGTACTGATCAT
CAGTATATCATCAAAACATTTATATATTCATGACTGTTTCACCATTCACA
CTACCCAAAGTATGGAACCAGCCTTGATGTTCATTAAAGGATGGATGAAA
AAAAATACGGTAGATAATACAGTAGAATTTTATTCAGCTGTAAAGAAAAA
TGAATCATGAAATTAGCAGAAAATGGGTGGAACTAGAAATTCAAAAAGGA
CATTGTTGTGGGCTGAAAGTTGTCTCAGAGAGTAAAAGTACTAGCTGCCA
ATCATGGTTACCTGAGTTCAGTCCCAGGAACCCATATGGTGGAAGAAAGA
ACTGGCTACTGTGACATATACATACTATTCTCTTCTAAAATAAATTGAAA
AAAAATATAGACATGTTTTAAGTGTACTTGTCACATGTTTTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no215_k11.b1 MSMg01no215_k11.b1 CHROMAT_FILE:
MSMg01no215_k11.b1 PHD_FILE: MSMg01no215_k11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:42:23 2005
         (321 letters)



>mm_chrX_161757192_161757912
          Length = 721

 Score =  598 bits (309), Expect = e-175
 Identities = 318/321 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gatattcatatctgaacttcaactgaactgtgctacaatctccaaaagtcaaagcctgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 gatattcatatctgaacttcaactgaactgtgctacaatctccaaaattcaaagcctgaa 260

                                                                       
Query: 61  gatctttggtttcatggaagaggatcaacccagctctaactatatatgaaatgtttcttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatctttggtttcatggaagaggatcaacccagctctaactatatatgaaatgtttcttt 320

                                                                       
Query: 121 agctactaactcactggacatttcagaaagctatattgagtacaaatgtaggttttaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agctactaactcactggacatttcagaaagctatattgagtacaaatgtaggttttaatg 380

                                                                       
Query: 181 tcacacattccagtttcaaacatagatctctagatatgagaaaaattagttggcatggca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcacacattccagtttcaaacatagatctctagatatgagaaaaattagttggcatggca 440

                                                                       
Query: 241 agcacaaagatgaggaagaaatattactccctaatattatctaatccaaattctataccc 300
           ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 441 agcacaaagatgaggaagaaatattactccctaatattatctactccaaattctatcccc 500

                                
Query: 301 cagactgctgcagtgcaatct 321
           |||||||||||||||||||||
Sbjct: 501 cagactgctgcagtgcaatct 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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