BAC Information

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BAC

Clone NameMSMg01-217I04
ChromosomeX (Build37)
Map Location 68,481,115 - 68,481,439
singlet/doubletsinglet
Overlap geneMtm1
Upstream geneIds, 1110012L19Rik, 4930567H17Rik, LOC100040304, LOC628002, LOC628012, BC023829, EG547447, LOC666981, LOC100040409, LOC628053, LOC100040432, EG280121, LOC666993, Ppia-psx_466.1, EG628080, G630014P10Rik, LOC667013
Downstream geneMtmr1, Cd99l2, LOC667017, Hmgb3, LOC100040549, Gpr50, LOC654357, 2610030H06Rik, Gm1141, Prrg3, Fate1, Cnga2, Magea4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-217I04.T7 (MSMg01no217_i04.b1)MSMg01-217I04.TJ (MSMg01no217_i04.g1)
ACCAG397017AG397018
length1,3021,458
length of high quality
(start - end)
325 (73 - 397)---
definitionCHROMAT_FILE: MSMg01no217_i04.b1 PHD_FILE: MSMg01no217_i04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:05 2005CHROMAT_FILE: MSMg01no217_i04.g1 PHD_FILE: MSMg01no217_i04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGTCTATGGGCCTATAGACTCCTAAGGGAGAGGATCCGCGGAATTCATC
TGGAATTACATAGAATTGTGTCAAACTAGCAGGGAGGTACAGAAGACAAT
GGTTGAGATCTGGAAAGGAAACAATCACTGTGCCCACACCCTTCAATGAG
GCAATGTCAATAATCAATGAGCCTAATTCTCATTAGTCACAGATGCTCCG
ATGAAGATGATGGCTCTTATGTGATAATCTAATCTCAGCAAGTGGCTAAT
TATCCAAATATATAGTAACTCATATGAGTTAGATCAGTTTATCTTAGCTG
CTTCAAATCTTAGAACTAAGTTACCTAGTTTGATGAGACCACAGAAAGCG
TAAAGTGCTAGGTAGGTTTTCATTTTGAAACTCACTCTTCTTACCATATA
TAAGAATTTAGCTCAAAGATGAATCTACTTTTACAACCTTAAATGTTCTT
TTTTTCCCCCCCCCCCACCAANTCAGAGGCTTCTAAAAAAGAAGAGGGAA
TCTTTTTTTTTTTTTCCCAGCAGCCAGTGACAGACTTTGGATAGATCTAT
TTACTCTATTTCTTGGTTTTCTCATGACAAATACCACATCTTCAGGACAG
TTGATTGGCTTTAGTGATACAAGCTGTTAGCCATAGAACAGAGTAATTTT
AGATATCATAAGCTAAAACTAGTTTGGCAAATAAACTACTAAAAGGTCAA
CAACTATAACCAATTTTCTTTTTATGAACAAAGGTAACTTAGTGATAGGG
CAGGCATTGAAGCGAACCATTAAAATCTCCAATGCATCGAGTAACAGTCA
ATCCCGTGACAGTAAACAAAGTTTTAAAATAGGATCAAGATCAAGTTACC
ATTTACCTGCCAATTCCAAGATTCTTGAACCCAGCTAATCTCTCCCCAAT
AAAACAAAATCTTTTGGTGAGTTATCTTCTGCAATGAAAATTAATTCCTC
CAAGCCCCTTGTTAAATTCATATGTTAAAAAACTTTTTTTTAAAGAAAAA
AGTCTCAATGTCCATCTGCTCAAATATTAATACATGCCATAGAAATTTTA
CTTTTTTGGGAATTGGAAAAAGCCCCCTTTACCCATTTAACTTTCCATTT
CATTTAATTTTTTTATATCTCTTGGAATCTCTTCAATTCACCTCATATAG
GTCCTTCCAAAAAACATCCCAAATATGTGCCTTAATCTCTTCCTTTAGAA
TTATTAAACTTCTCATATCTCTTCTGTGACTCTTTCAAATATAAACATAA
TAACATCGTTTCTTTGATACTCTACTATATATCATTCTCTTTTCATTATT
TG
TGGTGAGAGATGAGAACGACGAGAGAGTGAAGGACAACTGATACCTCACA
CAACCAGTTTTCTTNNTNNTAGCNCAAGAAGATAAAGAGAGCGACGGCNT
ACGGTGTTNCTGCCTAGTNCCTTCCCCCTTTTTACCCATACTTCGCCCTA
TGTTCTTATGCGCGCGACGCGCGCAGAGAGGCAGAGCCACATTAGAGATA
GAGATCAAGCAAGCAGTAGNAGCGCAGCAGGTTGGCGGTGCGTGTTCTTT
TGCGGATATCACGGCCGCCGCTACCTCTAGAATATATACGATATATCTAC
CCGCATAAATCCACTCTTCGACGATACGGATTCGAAACACATAAACCACG
AACTGATCCACACGAACAGAGCAAGCAGGTGAGGAATACTGCTTACAATG
CCAGGGAGTCGGTCTGCCCGCGATCTACACTCAACACTATACTGCGGCGC
GACGCCGCGCGCCGATATCTACCGCGGAGCACATCCGCCACATCACGCGA
GGCGCGGTCATTACTACACCACCGCGAATATACGATCAANTACATATTCA
CGGATCCATGGCAGATGAGACAGCGTCGAACACACAGAAACGCGGACAGC
GTATAGCGATATTCGAATATGTTAAAGATCGTATCAAACACTGGGGAGGG
ATATATCGTTCAGAGCATGACATCACGAATACTAGTATAGTGAGCGACGC
GGATCGCCGCCGCCTCTCATAGCGTCGCGCGACACGCGTATCAGACTATC
ACTCTAACCAACCGCGGAACGCAGTTCGTTATGCTCGCGTGAGATGACAC
TCGACATATCGGCGACGCGATTCAGACCGCGAATTACACTCGAAGAGAGC
CGTCGCGCGTACTACTTTCACGAGTTCACTTCGGCCGTAGCGATGGTGNG
TCAGCCAACGATCACGATACCCGCGATATAATTTACTCGTCACTCGACAC
CGACGTATATCAGCACGAGCAGCGCTATAAGTAAAGCACGTCGCCACCAC
GTGGTCGACGGATCTCTCGTACGCGCGCGCCGCGCACATATATAGACGAT
CACGCACCGTTATGCGCGTACNCCGCGCGACGGCGATCACACACAGACAT
CAGACATTGTATNCGTATANATAGCACANATGTCGGTACACAGATGATCG
GTGTCTATACACGTAGACGCGGCGCGAATATGATATGTATATGAGNCGAC
AGCGCATTTCTACGACGCGCGTATGCGATGANTAATTTCATGAGATGTAT
CACANCGCCGTATCGCGTACGTAATCGTACGTATATCACGTACACACGAT
ATCGTGTAGTATANTNGTCACTACTAGCCCAGAGACTAATGTCGATGCAC
AGGTATACAACTACTATATCACTACGCACGTAGAAATCACATCACGCGTC
TCGACAGCGCTGCCCGACGACGNCACGACATNANTAGTCGCGTCATCACT
CGCTGATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no217_i04.b1 MSMg01no217_i04.b1 CHROMAT_FILE:
MSMg01no217_i04.b1 PHD_FILE: MSMg01no217_i04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:45:05 2005
         (325 letters)



>mm_chrX_68480915_68481639
          Length = 725

 Score =  613 bits (317), Expect = e-180
 Identities = 323/325 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaactagcagggaggtacagaagacaatggttgagatctggaaaggaaacaatcactgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 525 aaactagcagggaggtacagaagacaatggttgagatctggaaaggaaataatcactgtg 466

                                                                       
Query: 61  cccacacccttcaatgaggcaatgtcaataatcaatgagcctaattctcattagtcacag 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 465 cccacacccttcaatgaggcaatgtcaataatcaatgagcctaattctcagtagtcacag 406

                                                                       
Query: 121 atgctccgatgaagatgatggctcttatgtgataatctaatctcagcaagtggctaatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 atgctccgatgaagatgatggctcttatgtgataatctaatctcagcaagtggctaatta 346

                                                                       
Query: 181 tccaaatatatagtaactcatatgagttagatcagtttatcttagctgcttcaaatctta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 tccaaatatatagtaactcatatgagttagatcagtttatcttagctgcttcaaatctta 286

                                                                       
Query: 241 gaactaagttacctagtttgatgagaccacagaaagcgtaaagtgctaggtaggttttca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 gaactaagttacctagtttgatgagaccacagaaagcgtaaagtgctaggtaggttttca 226

                                    
Query: 301 ttttgaaactcactcttcttaccat 325
           |||||||||||||||||||||||||
Sbjct: 225 ttttgaaactcactcttcttaccat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space:   226256
Effective search space used:   226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)