Query= MSMg01no231_f07.b1 MSMg01no231_f07.b1 CHROMAT_FILE:
MSMg01no231_f07.b1 PHD_FILE: MSMg01no231_f07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:35 2005
(610 letters)
>mm_chrX_39836445_39837454
Length = 1010
Score = 1122 bits (580), Expect = 0.0
Identities = 601/608 (98%), Gaps = 1/608 (0%)
Strand = Plus / Minus
Query: 4 ggaattcttagtcttgacatttttttatatgaagggaggtttcattcctcaaacagttaa 63
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 948 ggaattcttagtcttgatatttttttatatgaagggaggtttcattcctcaaacagttaa 889
Query: 64 tatcacaaataagcacagtttaacattcttttcagctattgtttgtcctatcttttttct 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 888 tatcacaaataagcacagtttaacattcttttcagctattgtttgtcctatcttttttct 829
Query: 124 ttctttttaaaattggttattttatttgtttgcatttcatatgttatcccccttcctggt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 ttctttttaaaattggttattttatttgtttgcatttcatatgttatcccccttcctggt 769
Query: 184 ttccccttcagaaaccccctatcgcatccctctccgcctctatgagggtgctcccgctcc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 ttccccttcagaaaccccctatcgcatccctctccgcctctatgagggtgctcccgctcc 709
Query: 244 tgcctcagtgttctagtattccccctaaactggatcacagaccatatgtttgtcctatct 303
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 708 tgcctcagtgttctagtattccccctaaactgggtcacagaccatatgtttgtcctatct 649
Query: 304 taaccactatctctgctaggaaatctttcatgaccattatgtaatcaataatgtaattag 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 taaccactatctctgctaggaaatctttcatgaccattatgtaatcaataatgtaattag 589
Query: 364 tagtttatagccctattttatattcatatatgtgcatgtgatacacacatatagacacaa 423
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 tagtttatagttttattttatattcatatatgtgcatgtgatacacacatatagacacaa 529
Query: 424 agacacaacttgtggtattcgttcatgggtgtgtgggaatgcatgcatatttgtgtataa 483
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 528 agacacaacttgtggtattcgctcatgggtgtgtgggaatgcatgcatatttgtgtataa 469
Query: 484 gcctat-ggggccagaaaatggcatcaggtgtcttaggcaattcctgcccaacttaattt 542
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 gcctatgggggccagaaaatggcatcaggtgtcttaggcaattcctgcccaacttaattt 409
Query: 543 ttgagccaaggtttcttgctgaacctgaagctcactgatgtgactagaatatctggccag 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 ttgagccaaggtttcttgctgaacctgaagctcactgatgtgactagaatatctggccag 349
Query: 603 tgagccca 610
||||||||
Sbjct: 348 tgagccca 341
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space: 600000
Effective search space used: 600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no231_f07.g1 MSMg01no231_f07.g1 CHROMAT_FILE:
MSMg01no231_f07.g1 PHD_FILE: MSMg01no231_f07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:36 2005
(239 letters)
>mm_chrX_39696233_39696871
Length = 639
Score = 449 bits (232), Expect = e-131
Identities = 235/236 (99%)
Strand = Plus / Plus
Query: 1 gtgtggtttgtgctgtgggcgtgatggttccaaaccaaagggcaccagcaggatgcagtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtgtggtttgtgctgtgggcgtgatggttccaaaccaaagggcaccagcaggatgcagtc 260
Query: 61 tgatgatcagggacagaggactcggagtgatgtagcagctgtgcacattgatgggttcct 120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgatgatcagggacagaggacttggagtgatgtagcagctgtgcacattgatgggttcct 320
Query: 121 aactcccagcccttagattttcccaggctgtttaagttcatgatcccagggtacttgcat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aactcccagcccttagattttcccaggctgtttaagttcatgatcccagggtacttgcat 380
Query: 181 gtccaccccctaccacacaccatctcattcaggtctcccccctcccccacagggtc 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtccaccccctaccacacaccatctcattcaggtctcccccctcccccacagggtc 436
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space: 144900
Effective search space used: 144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
