BAC Information

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BAC

Clone NameMSMg01-231H04
ChromosomeX (Build37)
Map Location 121,248,639 - 121,248,948
singlet/doubletsinglet
Overlap geneLOC100038940, LOC100038941, EG625699, LOC100038942
Upstream gene3110007F17Rik, LOC100039751, LOC100039763, LOC665281, EG625591, LOC665325, EG382265, LOC665364, EG546368
Downstream geneLOC100039828, EG434843, EG665463, EG665522, LOC100038969, LOC100038978
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-231H04.T7 (MSMg01no231_h04.b1)MSMg01-231H04.TJ (MSMg01no231_h04.g1)
ACCAG398260AG398261
length721731
length of high quality
(start - end)
316 (45 - 360)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no231_h04.b1 PHD_FILE: MSMg01no231_h04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:44 2005CHROMAT_FILE: MSMg01no231_h04.g1 PHD_FILE: MSMg01no231_h04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:44 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACAATCCCCGACATTGTCAAGAACTTAATATGAAGAGACTGCACCA
CTGCCTATATTCAATTGTCTGCCAACGCCTCATGTATGATCATGCATCTA
AATGCCTCCATAAAAGTGTTACCGAATTCTGGTTTCCAGCAGATGAACAT
GCATTGTTTCATGGAAATATGTGTGTATGTGTTGGTCTACTATACCTGGT
TATATGTATAACATTACCTATATACTTGTGAATATACATATACTTTGCTT
TATAAAATAGTCTTTAAATGAGCCTCATACTACAATTCTGGATTTGATAC
TGAATGTGTATTTTTTAATGCCACTCTCCTATTCTGTTACCAGAATAATC
TTTTATCCAATTGCATAACCGCACAGGCACAGATTAGTCTTATTATCACT
ATCTGATAGATGGTCAATATTTCTATTAACTACTCAATAAATTTAACATT
ATTTAGTAGTTAATATATATTCACAATTCCTTTCCATTCATCCCATGTCA
TGTTCCCTGGATACATAGGAAAAAGTCTGCCCTTAATCTCTACATCTGAG
GTCTGAAAAGATAATTCTAGGAGAATCATTGTACTTCTTGTGGAAAAGAA
ACTGATGTCCATGTGGCTTTTAGGTCTGAAAATCAAAGTGTGAGATGCTA
TTCATTTGTGGCTGCAGATCA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGGCCCACACCTAAACGTGATAA
AAGCAATCTACAGCAAACCAGGAGCCAGCATCAAAGTAAATGGAGAGAAG
CTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTCTC
TCCCTACCTCTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCCAC
AACAAGAGGAGATCAAGGGGATACAAATTGGAAAGGAGGAAGTCAAAATA
TCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTC
TCCAGAGAACTCCTATTTTTTGATAACCCGCCCCCCCCAAGTAGCTGGAT
ATAAAATAAACTCAAACAAGCCCCCGCCCTTTCACTACACAAAGAATAAN
CAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAA
TAGTATAAAATATCTCGGCGTGACTCTAACTAAGGAAGTGAAAGATCTGT
ATGATAAAAACTTCAAACCTCTGAAGAAAGAAATTAAAGAAGATCTCAGA
AGATGGAAAGATCTCCCATGCTCATGGATGGGCAGGATCAACATTGTAAA
AATGGCTATCTTGCCAAAAGCAATCTAAAGATTCATTGCAATCCCCATCA
AAATTCAAACACATTCTTTCAACGAATTAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no231_h04.b1 MSMg01no231_h04.b1 CHROMAT_FILE:
MSMg01no231_h04.b1 PHD_FILE: MSMg01no231_h04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:44 2005
         (316 letters)



>mm_chrX_121248435_121249150
          Length = 716

 Score =  449 bits (232), Expect = e-130
 Identities = 292/312 (93%), Gaps = 4/312 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacaatccccgacattgtcaagaactt-aatatgaagagactgca-ccactgcct 62
           ||||||||||||||| || |||||||||| || ||||||||||||||||| || ||||||
Sbjct: 514 gaattcacaatcccctactttgtcaagaa-ttcaatatgaagagactgcatcc-ctgcct 457

                                                                       
Query: 63  atattcaattgtctgccaacgcctcatgtatgatcatgcatctaaatgcctccataaaag 122
           |||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||
Sbjct: 456 atattcaattgtctgccaacacctcatgtatgatcatgcatctaaatgccttcatgaaag 397

                                                                       
Query: 123 tgttaccgaattctggtttccagcagatgaacatgcattgtttcatggaaatatgtgtgt 182
           ||||||| |||||||||||||| ||||||||||||||||||||||| ||||||| |||| 
Sbjct: 396 tgttacctaattctggtttccaacagatgaacatgcattgtttcattgaaatatttgtga 337

                                                                       
Query: 183 atgtgttggtctactatacctggttatatgtataacattacctatatacttgtgaatata 242
           |||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct: 336 atgtgttggtctactatacctggttaaatgtacaacattacttatatacttgtgaatata 277

                                                                       
Query: 243 catatactttgctttataaaatagtctttaaatgagcctcatactacaattctggatttg 302
            |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 276 tatatactttgctttataaaatagtctttaaatgagcctcatattgcaattctggatttg 217

                       
Query: 303 atactgaatgtg 314
           ||||||||||||
Sbjct: 216 atactgaatgtg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)