BAC Information

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BAC

Clone NameMSMg01-235C21
ChromosomeX (Build37)
Map Location 115,411,306 - 115,411,617
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC624284, LOC665066, EG624388, ENSMUSG00000072994
Downstream geneLOC100039551, Tgifx1, LOC665087
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-235C21.T7 (MSMg01no235_c21.b1)MSMg01-235C21.TJ (MSMg01no235_c21.g1)
ACCAG400836AG400837
length784734
length of high quality
(start - end)
317 (46 - 362)283 (75 - 357)
definitionCHROMAT_FILE: MSMg01no235_c21.b1 PHD_FILE: MSMg01no235_c21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:26 2005CHROMAT_FILE: MSMg01no235_c21.g1 PHD_FILE: MSMg01no235_c21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTACCTTAGGATAAGATGAAAATTGTAGGTAGAATTTGTCCAATAG
AAAAAACTTTGTTCTCACTTTTTGGGCACTATGACAATAAAGGATAGGAT
TGAAATAGTCTCGAACCCCCACAAAACTGCTGTAACATATAAGGGCCACA
TGAAGTCTGAATTCTGGTAAGTACTCTGGAGACAAGGTTGCCCAAGCACA
GGTTTACCTCTGGCTGGAATACAGACATATACTTAGTACACACCTTTAAT
CCCAAACAATGTAGATAAGATTATTTTGTAGAAGGAAGCAGCCATGTTTG
AAAGTGATCTCTTATTGAAGTGCCCACCCCCCCGACATATCAGAGGAAGA
TATAACAGAATGAGTCAAAGCTAGGAATACACCCCAACTCCATATTATCT
GTAGAACAGGCCGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGATAGACTTTTTCTCTTCCCTTTTTTT
TTTTCCCTCCTTTCCCTTTTTTTCCCTTTCCCCCCCCCTCCCCTTTTTTT
TTTCCTTCTCCTCTTCCCTTTCCCGTCCCCTCTTTTTTCCTTTCTATCCT
CCTTTCACTTTATTTTTTTTTTCTGCCCTCTTTTTTTTTTTCCCTACCCC
CACTTTTCTCTTTTCCATTTTGACCCTATTTTTTTTCTTTATTTATATAT
CTTACTTCTTTTTATCACTTTTTTTTCCTATTTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTTTTGGAGGATTTTACCTTTGATGA
CTATAAAGTGTCCCTCCTTGTCTTTTTTGATAACGTTGGGTTAGAAGTCG
ATTTTATTCGATATTAGAATGGCTACTCCAGCTTGTTTCTTCAGACCATT
TGCTTGGAAATTTGTTTTCCAGCCTTTCACTCTGAGGTAGTGTCTGTCTT
TTTCCATGAGGTGGATTTCCTTTAAGCAGCAGAATATTGGGTCCTGTTTG
TGTAGCCAGTCTGTTAGTCTATGTCTTTTTATTGGGGAATTGAGTCCATT
GTTATTATTATTTATTAACCCAAAGCAATCCCTGCTTTCTATTATTTTTG
TTTTTAGAGTTGGGATTCTGATTATGAGAATGTCTTCTTTTTGGTTTGTT
GAGGGATTATGTTCTTGCTTTTTCTAGGGCATGGTTTCAGCCCTTGTATT
GTTTTTTTATTTTATTTTTTCTGTTGTTATCCTTTGAAGGGCTGTATTCA
TGGAAAGATAATGTGAGAATTTGGTTTTGTCGTGGAATACTTTGGTTTCT
CCATCTGTGGTAATTGAGAGTTTGGCTGTTTATAGTAGCCTGGGTTGGCA
TTTGTGTTCTCTTAGTGTCTGTATAACATCTGTCTAGTATCTTCTGGCTT
TCATAGTCTCTGGGGAAAAGTCTGTTGTAATTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no235_c21.b1 MSMg01no235_c21.b1 CHROMAT_FILE:
MSMg01no235_c21.b1 PHD_FILE: MSMg01no235_c21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:26 2005
         (317 letters)



>mm_chrX_115411207_115411923
          Length = 717

 Score =  596 bits (308), Expect = e-175
 Identities = 311/312 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctaccttaggataagatgaaaattgtaggtagaatttgtccaatagaaaaaactt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 gaattctaccttaggataagatgaaaattgtaggtagaatttgtccaatagaaaaaactt 352

                                                                       
Query: 65  tgttctcactttttgggcactatgacaataaaggataggattgaaatagtctcgaacccc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 351 tgttctcactttttgggcactatgacaataaaggataggattgaaatagtctcaaacccc 292

                                                                       
Query: 125 cacaaaactgctgtaacatataagggccacatgaagtctgaattctggtaagtactctgg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 cacaaaactgctgtaacatataagggccacatgaagtctgaattctggtaagtactctgg 232

                                                                       
Query: 185 agacaaggttgcccaagcacaggtttacctctggctggaatacagacatatacttagtac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 agacaaggttgcccaagcacaggtttacctctggctggaatacagacatatacttagtac 172

                                                                       
Query: 245 acacctttaatcccaaacaatgtagataagattattttgtagaaggaagcagccatgttt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 acacctttaatcccaaacaatgtagataagattattttgtagaaggaagcagccatgttt 112

                       
Query: 305 gaaagtgatctc 316
           ||||||||||||
Sbjct: 111 gaaagtgatctc 100


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)