Query= MSMg01no236_g11.b1 MSMg01no236_g11.b1 CHROMAT_FILE:
MSMg01no236_g11.b1 PHD_FILE: MSMg01no236_g11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:57 2005
(668 letters)
>mm_chrX_65029320_65030390
Length = 1071
Score = 1265 bits (654), Expect = 0.0
Identities = 666/672 (99%), Gaps = 5/672 (0%)
Strand = Plus / Minus
Query: 1 tcctcaactgaagctcctttctctgtgataactccagctgtgtcaagttgaaacacaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tcctcaactgaagctcctttctctgtgataactccagctgtgtcaagttgaaacacaaaa 681
Query: 61 ccagccagtacagtacccatcacaaaaatctatgtttaactgagtgttacccagtataat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ccagccagtacagtacccatcacaaaaatctatgtttaactgagtgttacccagtataat 621
Query: 121 atctacaaaacctcagatatgaatattacactttaaccacgtttccataataaatggtga 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 620 atctacaaaacctcagatatgaatattacactttaaccacgtttccataatgaatggtga 561
Query: 181 ccaaatatcttaagtcttggcc----aaaaaaaaaaatagttttaagtaattcaaaggca 236
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 560 ccaaatatcttaagtcttggccaaaaaaaaaaaaaaatagttttaagtaattcaaaggca 501
Query: 237 tgttttgcattgtcttcatggatatattgaaactacttgttaacatctgaaaaagttata 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgttttgcattgtcttcatggatatattgaaactacttgttaacatctgaaaaagttata 441
Query: 297 gtatggttactaatttctgtttatataattcatcatataatatgatatacctttaaattt 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gtatggttactaatttctgtttatataattcatcatataatatgatatacctttaaattt 381
Query: 357 taagaaattatattattacatatcaaagaatcattttaatccataaacttactatagaaa 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 taagaaattatattattacatatcaaagaatcattttaatccataaacttactatagaaa 321
Query: 417 aaatgttttttttagaaatccaacttatatgcaaaattgatgaaaaaaattattacataa 476
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aaatg-tttttttagaaatccaacttatatgcaaaattgatgaaaaaaattattacataa 262
Query: 477 aattgatgagccctgacatatgcataagtccatgaaactatcacaagtattaaggttgta 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aattgatgagccctgacatatgcataagtccatgaaactatcacaagtattaaggttgta 202
Query: 537 gatgtttcaataacaaaaactatatcacctcctcaaattgtcctaagaacttaaaagtag 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gatgtttcaataacaaaaactatatcacctcctcaaattgtcctaagaacttaaaagtag 142
Query: 597 tagcacagtagactagttattgttagctctgtgtcagaatttattttgtttggaggaaat 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 tagcacagtagactagttattgttagctctgtgtcagaatttattttgtttggaggaaat 82
Query: 657 tttgccctacct 668
||||||||||||
Sbjct: 81 tttgccctacct 70
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1071
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1061
Effective search space: 698138
Effective search space used: 698138
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no236_g11.g1 MSMg01no236_g11.g1 CHROMAT_FILE:
MSMg01no236_g11.g1 PHD_FILE: MSMg01no236_g11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:58 2005
(296 letters)
>mm_chrX_64944331_64945026
Length = 696
Score = 306 bits (158), Expect = 1e-87
Identities = 276/344 (80%), Gaps = 56/344 (16%)
Strand = Plus / Minus
Query: 1 actaagtgtttatattcttttatggtaactgattatgagggagaaaatcaaagttgtctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 actaagtgtttatattcttttatggtaactgattatgagggagaaaatcaaagttgtctt 278
Query: 61 ggatatctttatatacatgatataaaataattaccatattgacttggacctttcttttct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 ggatatctttatatacatgatataaaataattaccatattgacttggacctttcttttct 218
Query: 121 ctccatcaaatagtggaatatatatatatatatacacacatatatatat----------- 169
|| |||||| |||||||||||||||||||||||| | | ||||||||||
Sbjct: 217 ctacatcaagtagtggaatatatatatatatatatatatatatatatatatatatatata 158
Query: 170 -------------ggtatatgtacagatatatcattcatata--tatctatatc----ca 210
||||||||||||||||||||||||||||| ||| ||||| ||
Sbjct: 157 tatatatatatatggtatatgtacagatatatcattcatataaatatatatatgtataca 98
Query: 211 tat--ag--------atat---tg---atatat-agatatatatgtg-atatataccaga 252
||| || |||| || ||| || | ||||||||||| || ||||
Sbjct: 97 tatgtaggacatttcatatacttgtgtataaatgatatatatatgtgtatgtata----- 43
Query: 253 tatatcat-tcatatatatatatatatatatatatatatatata 295
||||| || | ||||||||||||| | |||||||||||||||||
Sbjct: 42 tatat-atgt-atatatatatatacacatatatatatatatata 1
Score = 105 bits (54), Expect = 4e-27
Identities = 136/168 (80%), Gaps = 18/168 (10%)
Strand = Plus / Plus
Query: 138 atatatatatatatataca--cacatatatatatggtatatgtacaga--tatatca--t 191
||||| ||||||||||||| ||||||||||||| | ||| ||| | ||||| | |
Sbjct: 30 atatacatatatatatacatacacatatatatatcatttat--acacaagtatatgaaat 87
Query: 192 -tcatatatatctatatccatatagatattgatat--atagatatatatgtgatatatac 248
|| || |||| |||| |||||| ||||| |||| || ||||||| ||| | ||||||
Sbjct: 88 gtcctacatatgtata--catatatatatttatatgaat-gatatatctgt-acatatac 143
Query: 249 cagatatatcattcatatatatatatatatatatatatatatatatat 296
|| |||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 144 catatatat-at--atatatatatatatatatatatatatatatatat 188
Score = 64.5 bits (33), Expect = 7e-15
Identities = 55/67 (82%), Gaps = 11/67 (16%)
Strand = Plus / Plus
Query: 224 atatagatatatatgtgatatataccagatatatcattcatatatatatatatatatata 283
||||| |||||||| ||||||| ||||| || |||||||||||||||||||||
Sbjct: 145 atatatatatatat---atatata-----tatat-at--atatatatatatatatatata 193
Query: 284 tatatat 290
|||||||
Sbjct: 194 tatatat 200
Score = 62.6 bits (32), Expect = 3e-14
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 265 atatatatatatatatatatatatatatatat 296
||||||||||||||||||||||||||||||||
Sbjct: 200 atatatatatatatatatatatatatatatat 169
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 251
Number of extensions: 42
Number of successful extensions: 29
Number of sequences better than 10.0: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 7
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space: 197169
Effective search space used: 197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
