Query= MSMg01no236_o10.b1 MSMg01no236_o10.b1 CHROMAT_FILE:
MSMg01no236_o10.b1 PHD_FILE: MSMg01no236_o10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:35 2005
(657 letters)
>mm_chrX_80337487_80338543
Length = 1057
Score = 1054 bits (545), Expect = 0.0
Identities = 598/625 (95%), Gaps = 20/625 (3%)
Strand = Plus / Plus
Query: 1 tttaagaagctctgtagatgattataacagcatgtaaagactgaaagatattatactaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttaagaagctctgtagatgattataacagcatgtaaagactgaaagatattatactaag 260
Query: 61 caatacactcattattccatttattatcccctgtgattctataaaagaactattgttacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caatacactcattattccatttattatcccctgtgattctataaaagaactattgttacc 320
Query: 121 accctgctttacaaatgagaaaataggctataaccagcttgctgttttgtgcatgggtga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accctgctttacaaatgagaaaataggctataaccagcttgctgttttgtgcatgggtga 380
Query: 181 cacagctggctttcagagatgctgggatcttacatttttcagactataaaccctgtgttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacagctggctttcagagatgctgggatcttacatttttcagactataaaccctgtgttc 440
Query: 241 ttctacactccatcaaagccagagaaataaaaagtgagtaatttgaatgagcatttgcag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttctacactccatcaaagccagagaaataaaaagtgagtaatttgaatgagcatttgcag 500
Query: 301 tgctcaacctgcaagctctaatatgcagtaataatggatattcagcagtgctcaccctga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgctcaacctgcaagctctaatatgcagtaataatggatattcagcagtgctcaccctga 560
Query: 361 cattaacaaattacttgccaaaataacaaatgccttgttgaggaaaaccattaggacgca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 561 cattaacaaattacttgccaaaataacaaatgccttgttgaggaaaaccattaggacaca 620
Query: 421 tttttgttgtttgcttgaattttccccccataagttcaaacaattaattcaggttacacc 480
|||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 621 tttttgttgtttgcttgagttttccccccataagttcaaacaattaattca--------- 671
Query: 481 attcttgctcaatggatatacatactattttctccctctctgtctctctgtctctgtgtc 540
||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 672 -ttcttgctctatggatatacatactattttctccctctctgtctct--gtctctgt--c 726
Query: 541 tctgtctctgtctctgtctctctgtctctctgtctctctgtctctgtctctctgtctctc 600
||||||||||||||||||||| |||||| |||||| |||||||||||||| ||||||
Sbjct: 727 tctgtctctgtctctgtctct--gtctct--gtctct--gtctctgtctctctctctctc 780
Query: 601 tgtctctctgtctctctgtctctct 625
| ||||||| ||||||| |||||||
Sbjct: 781 tctctctctctctctctctctctct 805
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 68
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space: 677409
Effective search space used: 677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no236_o10.g1 MSMg01no236_o10.g1 CHROMAT_FILE:
MSMg01no236_o10.g1 PHD_FILE: MSMg01no236_o10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:35 2005
(650 letters)
>mm_chrX_80477480_80478530
Length = 1051
Score = 793 bits (410), Expect = 0.0
Identities = 440/450 (97%), Gaps = 1/450 (0%)
Strand = Plus / Minus
Query: 1 tcagtctggtagactttacttttttgttatttcttgtaaattatccacccttctttcaaa 60
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 450 tcagtctggtagactttacttttttgttatttcttgtaaattatcaatccttctttcaaa 391
Query: 61 tagtccattatgtttgcccttttaagttcatgatggatgctgtacaattaacattatcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tagtccattatgtttgcccttttaagttcatgatggatgctgtacaattaacattatcat 331
Query: 121 gacaactgaaatgcagaagcaatgggtctacacagtaattgcaataatacagtcatggca 180
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 330 ggcaactgaaatgcagaagcaatgggtctgcacagtaattgcaataatacagtcatggca 271
Query: 181 tttctcaagcatggaagcag-aaaaaaaatattatctgagcatgttatttttcttctctt 239
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 270 tttctcaagcatggaagcagaaaaaaaaatattatctgagcatgttatttttcttctctt 211
Query: 240 taatctttacttaaatttatttttactattaaaatttttctttatgtgtccctcttacca 299
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 210 taatctttacttaaatttatttttactattaaaatttttctttatgtgtccttcttaccg 151
Query: 300 gctggagcatcttctggatatatgcccaggagaggtattgcgggatcctccggtggtact 359
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 150 gttggagcatcttctggatatatgcccaggagaggtattgcaggatcctccggtggtact 91
Query: 360 atgtccaattttctgaggaaccgccagactgatttccagagtggttgtacaagcttgcaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 90 atgtccaattttctgaggaaccgccagactgatttccagagtggttgtacaagtttgcaa 31
Query: 420 tcccaccaacaatggaggagtgttcctctt 449
||||||||||||||||||||||||||||||
Sbjct: 30 tcccaccaacaatggaggagtgttcctctt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1051
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1041
Effective search space: 666240
Effective search space used: 666240
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
