BAC Information

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BAC

Clone NameMSMg01-237O07
ChromosomeX (Build37)
Map Location 56,756,288 - 56,756,583
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC631581, LOC631621, 4930550L24Rik, Fgf13
Downstream geneF9, EG434782, Mcf2, Atp11c, LOC666517, LOC631784, LOC100039611, LOC100039621
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237O07.T7 (MSMg01no237_o07.b1)MSMg01-237O07.TJ (MSMg01no237_o07.g1)
ACCAG402710AG402711
length731726
length of high quality
(start - end)
298 (368 - 665)364 (363 - 726)
definitionCHROMAT_FILE: MSMg01no237_o07.b1 PHD_FILE: MSMg01no237_o07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:50 2005CHROMAT_FILE: MSMg01no237_o07.g1 PHD_FILE: MSMg01no237_o07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTTCT
TACCTGAAGACCATCTCTAGAATGAAATCTTTCTTAGATGCTCATATCAA
AAGTGTTTTTCCTTGCTGAGCACTTATACAATACTTTACCCATAGCATCA
CATCTGGAGCTGGACTGATTATCTGAACAGAGGTGCCTTAACAAAGTGGC
CTCTCTATTCACATTTAATACACCTGGATGTATAATTAATGATAAATATA
CTACATGGTATTATGTATATTTCGTTTCATTCTGTCATTATGTATATCAT
ATAATGTACATATGTGTATAACGGAGAGTGGAAAAGGTGGATTTAGTTAA
TTACATTCACATACCTAGCATATAGTATGTATGCTTATAATACAAATTTA
TACATGTTCTATACCATCTTTATTAATATAGATATGTAGATACATATTTT
CTCATTTTTTTTTTTGAAAAATCAGGTTTGGGAAGAATCACTACATAACT
TTCGACAGAGTTCTTTCCCAAAGGAGCTCTCATTTACTTATTATTTTCTA
GGGACTGAACACAGCTTTCTACTTCTGAGCTGAGTCGTCTAGCACTGAGC
TAAATTCTCAACCAAATTAAGTGCAATGTTCTGACTGATCATAATGTTGC
CTTGCCCAAACAGAAAATTCGGTTTCCAGGGCGTATTGTACAGTGTCTAG
TAAACACTTGAAATTAAATGTTCCCTGACTC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTCACCTGAGGAATACCGAATGGCAGAAAAGCACCTGAAAAAAT
GTCCCCCATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGA
TTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAG
AAATGCTGGCATGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTG
GGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCA
TATAATTGGACATAGTACTACCAGAGGATCCAGCAATACCTCTCCTGGGC
ATTTACCCCGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTAT
GTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTAGAT
GCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATG
GAGTACTACTCAGCAATTAAAAAGAATGAATTTATGAAATTCCTAGCCAA
ATGGATGGACCTGGAGGGCATCATCCTGAATGAGGTAACACATTCACAAA
GAAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCCAAACC
TAGGATACCCAAGATATAAGATATAATTTGCTAAACACATGAAACTCAAG
AAGAATTAAGACTGAAGTGTGGACAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_o07.b1 MSMg01no237_o07.b1 CHROMAT_FILE:
MSMg01no237_o07.b1 PHD_FILE: MSMg01no237_o07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:50 2005
         (298 letters)



>mm_chrX_56756088_56756783
          Length = 696

 Score =  549 bits (284), Expect = e-161
 Identities = 294/298 (98%), Gaps = 2/298 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcatatagtatgtatgcttataatacaaatttatacatgttctataccatctttattaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gcatatagtatgtatgcttataatacaaatttatacatgttctataccatctttattaat 437

                                                                       
Query: 61  atagatatgtagatacatattttctcatttttttttttgaaaaatcaggtttgggaagaa 120
           |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||
Sbjct: 436 atagatatgtagatacatattttctca--tttttttttgaaaaatcaggtttgggaagaa 379

                                                                       
Query: 121 tcactacataactttcgacagagttctttcccaaaggagctctcatttacttattatttt 180
           ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 378 tcattacataactttcgacagagtactttcccaaaggagctctcatttacttattatttt 319

                                                                       
Query: 181 ctagggactgaacacagctttctacttctgagctgagtcgtctagcactgagctaaattc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ctagggactgaacacagctttctacttctgagctgagtcgtctagcactgagctaaattc 259

                                                                     
Query: 241 tcaaccaaattaagtgcaatgttctgactgatcataatgttgccttgcccaaacagaa 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tcaaccaaattaagtgcaatgttctgactgatcataatgttgccttgcccaaacagaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 696
Length adjustment: 9
Effective length of query: 289
Effective length of database: 687
Effective search space:   198543
Effective search space used:   198543
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)