BAC Information

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BAC

Clone NameMSMg01-260I04
ChromosomeX (Build37)
Map Location 69,843,577 - 69,843,916
singlet/doubletsinglet
Overlap geneGabra3
Upstream geneLOC100040549, Gpr50, LOC654357, 2610030H06Rik, Gm1141, Prrg3, Fate1, Cnga2, Magea4, Gabre, Magea10
Downstream geneGabrq, Magea9, Cetn2, Nsdhl, Zfp185, Pnma5, LOC628237, Pnma3, Xlr4a, Xlr3a, Xlr5d, MGC106740, DXBay18, LOC627081, 4930408F14Rik, EG574437, Xlr4b, F8a, Xlr4c, Xlr3b, Xlr5c, EG434795, EG667187, LOC630169, Zfp275, Gm369, Zfp92, Trex2, Uchl5ip, Bgn, Atp2b3, LOC732481
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-260I04.T7 (MSMg01no260_i04.b1)MSMg01-260I04.TJ (MSMg01no260_i04.g1)
ACCAG403156AG403157
length756736
length of high quality
(start - end)
249 (84 - 332)343 (80 - 422)
definitionCHROMAT_FILE: MSMg01no260_i04.b1 PHD_FILE: MSMg01no260_i04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:37 2005CHROMAT_FILE: MSMg01no260_i04.g1 PHD_FILE: MSMg01no260_i04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTTTCCCGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTAG
AGAATCCGCGGAATTCCCCTATACTGCCGCATAGAACTTTCACAGGACCA
TGGGCCTCTGCTCCCATTGATGACTGATTAGGCCATCCTCTGCTACATAT
GCAGCTAGAGGCACAAGAACTCTGGAGCTCTGGGGGTACTGGTTAGTTCA
TATTGTTGTTCCTCCTATGGGACTGCAACCCCCTTCAGCTCCTTGGGTCC
TTCCTCTAGTTCCTTCACTGGAGACCTTGTGCTCCATCCAATGGATGACT
GTGAGCATCTACTTCTGTATTATCCAGGCACTGTCTTATCTTCTCAGGAG
ACAGCTACATCAGGCTCCTGTCAGCAAGCTCTTGTTGGCATCTGCAATAG
TTTAACCTATCTTTCAATTTACGAGCAACACAACAATGTTTAAAGAAATT
GATGTTAGCTTGTATTTTTAAATTCTATGATAACCAATATGCCTTCTCCC
CTGAATGTTCTCTATTTGCATTCATTTATTTATAAACATTCATCTTTTAT
ATTTGAACGCTTCTATCTGATTTACTCCCACCTCCATAGCCCCTACATGT
TTGTATCTTAAACTGTGGCATACCTCATATACTCTAAGTATGACCATATT
TTCGCACATTTGCACCTCCCTGCCCAATACGTATACCCTTTGTATCTATT
ATCTGAACCAGTCCTTTGCATACTTTCTTCTGTGTACGGCAACTTCATTC
ATCCTG
CTCCGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTCCAATCCTATGGGCACCT
TCAACTTTAAATGAACTAGGAAAATACTATGTGACCAAAATTATTCAATT
TGAGCTTAGTTTTTTTTTCTCTAACATTCCGGTATTGCTTTCTGAGCAAG
TAAAAATCTCTTCATACTTTAGATTTATATCTTTTTAGGTTGAAACTTTC
TTATCATTCCTACATATCCTGATTGGGTTAAGGATAAAATATGATAACAG
ATGCCAAAGTATATCATGAATATACAGAAATTATTATTAGAACAACATAA
TTACTGATTGCATACCTATCATATATTATCTACTTTAGTCAAATATATAT
AATCAACAATTATATTTGCATTCTATCAACAATTATATTTGTCTTTTAAA
TCATTTTACAATAAAAAAGAAACAAAACATTACCCTTCTCTCATAGATGG
ATACAAGCGTATTATTTTTTTATCACTGATATAAAAACCTATCACCACTA
TGTACCTTTATTGCATTAAACATCGAAAAAATATATTTAAAAAGTCTGTA
ACGTTAATATGCTTTCCAAAATGTGTTGTCTCTACAAGCTTTGACGACAC
ACTTGCTTTCCAGACTTGCTCAAATTACTGATAGACTCCCTTTCTTACGA
TTGCTGAATTCAGGTCGCATTTTTCTTTGCTGGTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no260_i04.g1 MSMg01no260_i04.g1 CHROMAT_FILE:
MSMg01no260_i04.g1 PHD_FILE: MSMg01no260_i04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:38 2005
         (343 letters)



>mm_chrX_69843377_69844120
          Length = 744

 Score =  619 bits (320), Expect = 0.0
 Identities = 335/340 (98%), Gaps = 1/340 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctccaatcctatgggcaccttcaactttaaatgaactaggaaaatactatgtgaccaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 540 tctccaatcctatgggcaccttcaactttaaatgaactaggaaaatactatgtaaccaaa 481

                                                                       
Query: 61  attattcaatttgagcttag-tttttttttctctaacattccggtattgctttctgagca 119
           |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 480 attattcaatttgagcttagttttttttttctctaacattctggtattgctttctgagca 421

                                                                       
Query: 120 agtaaaaatctcttcatactttagatttatatctttttaggttgaaactttcttatcatt 179
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 agtaaaaatctcttcatattttagatttatatctttttaggttgaaactttcttatcatt 361

                                                                       
Query: 180 cctacatatcctgattgggttaaggataaaatatgataacagatgccaaagtatatcatg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 cctacatatcctgattgggttaaggataaaatatgataacagatgccaaagtatatcatg 301

                                                                       
Query: 240 aatatacagaaattattattagaacaacataattactgattgcatacctatcatatatta 299
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 300 aatatacagaaattattattagaacaacataatcactgattgcatacctatcatatatta 241

                                                   
Query: 300 tctactttagtcaaatatatataatcaacaattatatttg 339
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 tctactttagtcaaatatatataatcaacaattatatttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 744
Length adjustment: 9
Effective length of query: 334
Effective length of database: 735
Effective search space:   245490
Effective search space used:   245490
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)