NAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCAGTACTGACCTCCTCGATGATGAACAGCAGAATGGAAGTGT
AAGCTGAATAAACCTTTTCCTCCCTAACTTGCTTCTTGGTCATGATGTTT
GTGCAGGAATAGAAACCCTGACTAAGACACACATCCATAAAAGAAATTTT
ACTAAAGCTCAAAACACACATTGAACTTCTCATAATTATAGTGGGGGACT
TCAACACTCCACTCTCACCAATGGACAGGTCATTGAAATAGAAAGTAACA
GACACGGTGAAATGAACAGAAGTTATGAACCAAATGGATTTAAAAGATAT
CTATAGAACATTTCACCCCAAAACAAGAGAATATACATTAATTCTCAGCT
TCCTCATGGAAACATTTCTCCCCAAAACCCGAAAAAAAAAAAATTGGGTT
TAAAAAAAAAAAGGCCTCCCTCCCGTGGTATACAAAAAAAAAAAAGGTGG
GGGGTATTAACCTCTCCCCCGTCTGGTGTTTTTCCTTTCTCTTCTCCAAC
ACAAACTATATACTCTTTCTATTTCCTTTTTCTCTTCTTACCATCTATTT
TCCTTCCTTCCTCTTCGGNGTCCGGTTTTGTTTTTTTTGGCTGCTCTACT
ACACTCCTCATATATAACCACCAAATCCCATTCTTTTCTCGGTCTTATTT
GCCATATAAATTTTACTATTTT

AATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXGGTACACAGAACAATTTTATCAGTGTA
TTGGGGGCTAAGTGTGTTGTGTTTTTGAAACAAATTCCTGAAAGATGAAA
AGCAGATGAAAGGGTCACTGAAAGTGACCCGTCCAGCAGGTCCAGTTATT
TGAGGGTCTCGAGGGGACCTTCTCCTAAGAACCAAATGGGGGGTGAGAGA
GACGGAAACCAAGTACAAGAACGACATGGAAGCAGTCTGAGTAGCATCAA
TGTCTCTCTGTATTCAGCAAGGCTTAAATGCACAAGCAAAAGGGAAAGTA
CTTCTCAGCAGGAGGAATGGGGCAGCAGAAATGCACAAGCAAAAGAGGAA
GTACTTCTCAGCAGGAGGCCCGGGGCAGTAGAAATTTTTCTTTTGGCAGC
TACAAGGGGAAGCAGGAACTTGGTGGTATCAGGTTACATCTTGTGGTCAG
GACATCTGACACTGATTTAGGGCTGGAATATTCTGTGGTTGTTCTCAGAA
TGGTGCATCAGTGGCCCGCTTTGACCCCCTTTTCTTCTTGGGGGAGAGGC
CCAATTCCGAGATCATGACAATAGTGTTGTCTTAATAACTCCCAAAATGA
AAGGATTTAAACTATAGAAATTAACCAAACGATATATTTATCGCACAACA
AACTGTAGTGATCCCGGCCATGTTTAAAAAGGTCTCGCAAAGAACATTGA
ACTCGG

Query= MSMg01no260_l16.g1 MSMg01no260_l16.g1 CHROMAT_FILE:
MSMg01no260_l16.g1 PHD_FILE: MSMg01no260_l16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:55 2005
         (537 letters)



>mm_chrX_31704663_31705599
          Length = 937

 Score =  907 bits (469), Expect = 0.0
 Identities = 520/537 (96%), Gaps = 3/537 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggtacacagaacaattttatcagtgtattgggggctaagtgtgttgtgtttttgaaacaa 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct: 201 ggtacacagaacaattttatcagtgtattgggggctaggtgtgttgtgtttttaaaacaa 260

                                                                       
Query: 61  attcctgaaagatgaaaagcagatgaaagggtcactgaaagtgacccgtccagcaggtcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attcctgaaagatgaaaagcagatgaaagggtcactgaaagtgacccgtccagcaggtcc 320

                                                                       
Query: 121 agttatttgagggtctcgaggggaccttctcctaagaaccaaat-ggggg-gtgagagag 178
           ||||||| |||||||||||||||||||||||||||||||||||| ||||| | |||||||
Sbjct: 321 agttattcgagggtctcgaggggaccttctcctaagaaccaaatagggggagagagagag 380

                                                                       
Query: 179 acggaaaccaagtacaagaacgacatggaagcagtctgagtagcatcaatgtctctctgt 238
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 acggaaaccaagtacaagaacgacatggaagcagtctgagtagcatcaaggtctctctgt 440

                                                                       
Query: 239 attcagcaaggcttaaatgcacaagcaaaagggaaagtacttctcagcaggaggaatggg 298
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 441 attcagcaaggcttaaatgcacaagcaaaaggggaagtacttctcagcaggaggaatggg 500

                                                                       
Query: 299 gcagcagaaatgcacaagcaaaagaggaagtacttctcagcaggaggcccggggcagtag 358
           ||||  |||||||||||||||||||||||||||||||||||||||||   |||||||| |
Sbjct: 501 gcagtggaaatgcacaagcaaaagaggaagtacttctcagcaggaggggtggggcagtgg 560

                                                                       
Query: 359 aaatttttcttttggcagctacaaggggaagcaggaacttggtggtatcaggttacatct 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaatttttcttttggcagctacaaggggaagcaggaacttggtggtatcaggttacatct 620

                                                                       
Query: 419 tgtggtcaggacatctgacactgatttagggctggaatattctgtggttgttctcagaat 478
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtggtcaggacatctgacactgaattagggctggaatattctgtggttgttctcagaat 680

                                                                    
Query: 479 ggtgcatcagtggcccgctttgacccccttttcttcttggggg-agaggcccaattc 534
           |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 681 ggtgcatcggtggcccgctttgacccccttttcttcttggggggagaggcccaattc 737


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space:   488529
Effective search space used:   488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)