This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
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RIKEN MSM/Ms Mouse BAC clones & Library
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BAC Information
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Search Result
BAC
Clone Name
MSMg01-262C17
Chromosome
X (Build37)
Map Location
164,749,097 - 164,749,728
singlet/doublet
singlet
Overlap gene
Frmpd4
Upstream gene
Tlr7
,
Prps2
,
EG627311
Downstream gene
EG667822
,
EG637566
,
Msl31
,
Arhgap6
,
Amelx
,
Hccs
Link
Open Mouse BAC browser
Click to get alignment info.
name
Tlr7
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:170743
MGI:2176882
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Prps2
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:110639
MGI:97776
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
EG627311
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:627311
MGI:3648299
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins
name
Frmpd4
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:333605
MGI:3042378
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
EG667822
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:667822
MGI:3646854
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins
pseudo
: _no_value
name
EG637566
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:637566
MGI:3645245
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins
name
Msl31
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:17692
MGI:1341851
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Arhgap6
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:11856
MGI:1196332
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs
name
Amelx
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:11704
MGI:88005
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs
name
Hccs
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:15159
MGI:106911
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Tlr7
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:141803199
GeneID:170743
MGI:2176882
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: toll-like receptor 7
transcript_id
: NM_133211.3
name
Prps2
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:141802916
GeneID:110639
MGI:97776
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: phosphoribosyl pyrophosphate synthetase 2
transcript_id
: NM_026662.3
name
EG627311
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:83004720
GeneID:627311
MGI:3648299
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins
product
: predicted gene, EG627311
transcript_id
: XM_891970.1
name
Frmpd4
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:118131064
GeneID:333605
MGI:3042378
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: FERM and PDZ domain containing 4
transcript_id
: NM_001033330.2
name
EG637566
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:94408488
GeneID:637566
MGI:3645245
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins
product
: predicted gene, EG637566
transcript_id
: XM_913285.2
name
Msl31
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:141802420
GeneID:17692
MGI:1341851
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: male-specific lethal-3 homolog 1 (Drosophila)
transcript_id
: NM_010832.3
name
Arhgap6
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:118130288
GeneID:11856
MGI:1196332
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: Rho GTPase activating protein 6
transcript_id
: NM_009707.3
name
Arhgap6
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:118130616
GeneID:11856
MGI:1196332
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: Rho GTPase activating protein 6
transcript_id
: NM_178754.2
name
Amelx
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:126517497
GeneID:11704
MGI:88005
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: amelogenin X chromosome
transcript_id
: NM_001081978.1
name
Amelx
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:127141014
GeneID:11704
MGI:88005
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: amelogenin X chromosome
transcript_id
: NM_009666.2
name
Hccs
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142346469
GeneID:15159
MGI:106911
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: holocytochrome c synthetase
transcript_id
: NM_008222.3
name
Tlr7
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:18875360
CCDS:CCDS30531.1
GeneID:170743
MGI:2176882
definition
GO_component
: GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0003725 - double-stranded RNA binding [Evidence ISS]; GO:0004872 - receptor activity [Evidence IEA]; GO:0003727 - single-stranded RNA binding [Evidence IMP]; GO:0035197 - siRNA binding [Evidence IMP]; GO:0016740 - transferase activity [Evidence IEA]; GO:0004888 - transmembrane receptor activity [Evidence IEA]
GO_process
: GO:0051607 - defense response to virus [Evidence ISS]; GO:0006955 - immune response [Evidence IEA]; GO:0006954 - inflammatory response [Evidence IEA]; GO:0045356 - positive regulation of interferon-alpha biosynthesis [Evidence ISS]; GO:0045359 - positive regulation of interferon-beta biosynthesis [Evidence ISS]; GO:0045078 - positive regulation of interferon-gamma biosynthesis [Evidence ISS]; GO:0045416 - positive regulation of interleukin-8 biosynthesis [Evidence ISS]
codon_start
: 1
product
: toll-like receptor 7
protein_id
: NP_573474.1
name
Prps2
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:13386146
CCDS:CCDS30532.1
GeneID:110639
MGI:97776
definition
EC_number
: 2.7.6.1
GO_function
: GO:0046872 - metal ion binding [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]
codon_start
: 1
product
: phosphoribosyl pyrophosphate synthetase 2
protein_id
: NP_080938.1
name
EG627311
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:83004721
GeneID:627311
MGI:3648299
definition
codon_start
: 1
product
: hypothetical protein
protein_id
: XP_897063.1
name
Frmpd4
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:85362701
GeneID:333605
MGI:3042378
definition
GO_component
: GO:0005856 - cytoskeleton [Evidence IEA]
GO_function
: GO:0005515 - protein binding [Evidence IEA]
codon_start
: 1
product
: PDZ domain containing 10
protein_id
: NP_001028502.1
name
EG637566
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:94408489
GeneID:637566
MGI:3645245
definition
codon_start
: 1
product
: hypothetical protein
protein_id
: XP_918378.2
name
Msl31
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:11545735
GeneID:17692
MGI:1341851
definition
GO_component
: GO:0000785 - chromatin [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA]
GO_function
: GO:0003682 - chromatin binding [Evidence IEA]
GO_process
: GO:0006333 - chromatin assembly or disassembly [Evidence IEA]; GO:0016568 - chromatin modification [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA]
codon_start
: 1
product
: male-specific lethal-3 homolog 1
protein_id
: NP_034962.2
name
Arhgap6
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:87252724
CCDS:CCDS30534.1
GeneID:11856
MGI:1196332
definition
GO_component
: GO:0015629 - actin cytoskeleton [Evidence IDA]; GO:0005622 - intracellular [Evidence IEA]
GO_function
: GO:0005096 - GTPase activator activity [Evidence IEA]; GO:0005100 - Rho GTPase activator activity [Evidence IDA]
GO_process
: GO:0007015 - actin filament organization [Evidence IDA]; GO:0048041 - focal adhesion formation [Evidence IDA]; GO:0043087 - regulation of GTPase activity [Evidence IDA]; GO:0007165 - signal transduction [Evidence IEA]
codon_start
: 1
note
: isoform a is encoded by transcript variant 1
product
: Rho GTPase activating protein 6 isoform a
protein_id
: NP_033837.2
name
Arhgap6
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:87252731
GeneID:11856
MGI:1196332
definition
GO_component
: GO:0015629 - actin cytoskeleton [Evidence IDA]; GO:0005622 - intracellular [Evidence IEA]
GO_function
: GO:0005096 - GTPase activator activity [Evidence IEA]; GO:0005100 - Rho GTPase activator activity [Evidence IDA]
GO_process
: GO:0007015 - actin filament organization [Evidence IDA]; GO:0048041 - focal adhesion formation [Evidence IDA]; GO:0043087 - regulation of GTPase activity [Evidence IDA]; GO:0007165 - signal transduction [Evidence IEA]
codon_start
: 1
note
: isoform b is encoded by transcript variant 2
product
: Rho GTPase activating protein 6 isoform b
protein_id
: NP_848869.1
name
Amelx
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:126517498
GeneID:11704
MGI:88005
definition
GO_function
: GO:0005515 - protein binding [Evidence IPI]
GO_process
: GO:0001503 - ossification [Evidence IEA]
codon_start
: 1
note
: enamel matrix protein
product
: amelogenin X chromosome
protein_id
: NP_001075447.1
name
Amelx
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:32996703
GeneID:11704
MGI:88005
definition
GO_function
: GO:0005515 - protein binding [Evidence IPI]
GO_process
: GO:0001503 - ossification [Evidence IEA]
codon_start
: 1
note
: enamel matrix protein
product
: amelogenin X chromosome
protein_id
: NP_033796.1
name
EG667822
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:667822
definition
number
: 1
pseudo
: _no_value
name
EG667822
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:667822
definition
number
: 2
pseudo
: _no_value
clone name
MSMg01-387J09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-147O02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-508I16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-121L20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-373N04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-503K18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-508J08
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-129N07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-050N04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-496N02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-394K21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-049P19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-492N05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-062H01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-536C22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-161P16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-137O23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-072H06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-321O22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-336J16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-452A20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-124D21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-317D04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-143L16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-436M19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-262C17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-484J03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-547J04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-335P14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-311A13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-506A15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-503M09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-510J20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-376D03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-459I09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-166D08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-190B12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-548F16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-340A01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-458P22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-478C11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-536F17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-474L23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-519O18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-055K10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-115N17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-344G07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-323N10
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-143A18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-376G17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-532D10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-422B16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-381J17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-237N21
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-227E02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-002D08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-303E13
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-240D16
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-114I21
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-275A16
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-027A01
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-261P11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-196G05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-093B19
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-237P03
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-052H07
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-206O04
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-281H18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-078J20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-220M13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-288N03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-284D06
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-044H01
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-248B23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-161K23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-077A07
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-218C08
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-318L20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-032H07
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-179A23
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-084J23
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-181E18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-333I01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-257N12
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-073H01
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-312B19
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-023L24
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-075B20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-328D01
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-020B01
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-264N13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-264N14
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-253D20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-349E16
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-141I12
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-339K16
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-107A14
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-297B05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-035G11
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-136N09
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-262C07
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-003D14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-110L15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-134A23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-320F02
singlet/doublet
doublet
plural/unique
unique
