BAC Information

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BAC

Clone NameMSMg01-262I08
ChromosomeX (Build37)
Map Location 156,486,380 - 156,486,695
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040371, Rps6ka3, Eif1ay, Mtap7d2, A830080D01Rik, LOC100041359, Sh3kbp1, LOC667524
Downstream genePdha1, LOC100041403, LOC100041416, LOC100041427, Gpr64, Phka2, Ppef1, Rs1, Gja6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-262I08.T7 (MSMg01no262_i08.b1)MSMg01-262I08.TJ (MSMg01no262_i08.g1)
ACCAG404599AG404600
length765771
length of high quality
(start - end)
252 (65 - 316)322 (71 - 392)
definitionCHROMAT_FILE: MSMg01no262_i08.b1 PHD_FILE: MSMg01no262_i08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:11 2005CHROMAT_FILE: MSMg01no262_i08.g1 PHD_FILE: MSMg01no262_i08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGATCCGCGGAATTC
AGTATTTTCCAGCTCAATAAAGGAGATAATTGATGGTGAGAGCTATAGAT
TGGTTGGTTTACATATGAAAGGCAATGTTCCCTGATAAGTTCTTTGTTAT
CTCTAGGAACTAGCCAGTCTAGGAGAAGCCATTCCTGTAAAATCAGAATG
ATCCAAGATTTCAAAGAATCAAGAAGACAGAATTAAAAGATGTAATTTTA
AAAAAAGAAAAAGAAAAAGAGTACCTTAGCTGGGAATGGTTACTCAAACC
TTTAGTCCCATCACAAGATATTAAGTGAGCACAAATACAGGAGATATGGT
TAAGCTCAGAGAATGGGATTGAATACATGAACAAGGTATTGCCAAGTAGT
GGTGGTGCATGCCCCCCATGTTAGACCTCAGGAGGCAGAGGTAGGAAGGC
TCAAGGCCAGCCTGGTCTAATGAGCAAGTTCTAGAAAAGCCAGTGATATA
CAGAGAAACTCTATCTTGACTAGGAAAAACAAAAACCTAACACCACTTTC
ATCAGACAGAGATAGAGAGAGACAGATAGAATCCGACCTCTTGATTCCCA
ACCATCACATAACAACTCTAGCTTTGATTGCACAACTCCTGTCATCCTTA
GCTCTACCCTAGCCCAAATATCGATTCCCTGCTATCTTGCTATTTTTTCT
TTTTTTATTTGTCTCCGCTTACTCTTCCTTGTTTTTTCCATTCTATCTCT
TTACCTATCTCTTAT
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCATTGGGCTGGAATGTGAAAATAGAATTCT
TTTTGGACAAGGTGCATCCAAGTATTATTCAGTGCAACCAGATCACAAGA
TGCAAGTGAAGGTAAATGCAGGACATAAGGTTAAGTGTAGAGAATGGAAT
CGAATACATGAAAAAGTTATTGCCAGGCAGTGGCAGTTTATGCCTTTAAT
CCCAGCATGCTGGAGGCAGAGGCATACAGATCTCTGTAAGTTCAAGGCTA
GCCTGGTCTACAGAGCTAGTTCAAGAACAGCCAGGGATACACAAAGAAAC
CCTGTCTCAAAAAAGAGGAGTGGGGTGGAGGGGGGGAGNNNNNNNNNNNN
NNNNNCCCCCCCCTTTTTCCNTNTTTNNCTCTTTTTCTCCCTTTTTCTCT
CTTTTTCCCCTCTTTTTTTTTTTCTTCCCCCCTTTTTCCCCCTTCCCCTC
CCTCCTTGCCCCCTTTCTTTTTCTTTCCGCCCCTTCTTTTCCTTTCTTTC
CCCCCCTCTTCCTCCCCCCCTTTTTCTTCCCCCCCCCTTTTTCTCCCCTT
GCCCTTTTTTCCTCTTTTTTTCCCTTTCTTTCCCCCTTCTCCCCCTCCCT
CCCTTCCCCTTTCTCCTTTTCCCCTCCCTTTTTTGTTTTTCCCCCTTTGT
TTTTCCCCCCTTCCCCTTTCTCTTCTTTTTGTCCCCCCTGTTTTTTTCCC
GCCCTTTCCCCCCTTCTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no262_i08.g1 MSMg01no262_i08.g1 CHROMAT_FILE:
MSMg01no262_i08.g1 PHD_FILE: MSMg01no262_i08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:11 2005
         (322 letters)



>mm_chrX_156486180_156486901
          Length = 722

 Score =  580 bits (300), Expect = e-170
 Identities = 313/318 (98%), Gaps = 2/318 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cattgggctggaatgtgaaaatagaattctttttggacaaggtgcatccaagtattattc 60
           |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catttggctggaatgtgaacatagaattctttttggacaaggtgcatccaagtattattc 260

                                                                       
Query: 61  agtgcaaccagatcacaagatgcaagtgaaggtaaatgcaggacataaggttaagtgtag 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 agtgcaaccagatcacaagatgcaagtgaaggcaaatgcaggacataaggttaagtgtag 320

                                                                       
Query: 121 agaatggaatcgaatacatgaaaaagttattgccaggcagtggcagtttatgcctttaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaatggaatcgaatacatgaaaaagttattgccaggcagtggcagtttatgcctttaat 380

                                                                       
Query: 181 cccagcatgctggaggcagaggcatacagatctctgtaagttcaaggctagcctggtcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccagcatgctggaggcagaggcatacagatctctgtaagttcaaggctagcctggtcta 440

                                                                       
Query: 241 cagagctagttcaagaacagccagggatacacaaagaaaccctgtctcaaaaaagaggag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagagctagttcaagaacagccagggatacacaaagaaaccctgtctcaaaaaagaggag 500

                             
Query: 301 tggggtggagggggggag 318
           ||||||||  ||||||||
Sbjct: 501 tggggtgg--ggggggag 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)