BAC Information

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BAC

Clone NameMSMg01-263A14
ChromosomeX (Build37)
Map Location 42,115,770 - 42,116,280
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC637141, Wdr40c
Downstream geneWdr40b, LOC665585, 1110059M19Rik, LOC100040038, EG385346
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-263A14.T7 (MSMg01no263_a14.b1)MSMg01-263A14.TJ (MSMg01no263_a14.g1)
ACCAG404969AG404970
length753753
length of high quality
(start - end)		708 (46 - 753)510 (76 - 585)
definitionCHROMAT_FILE: MSMg01no263_a14.b1 PHD_FILE: MSMg01no263_a14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:50 2005CHROMAT_FILE: MSMg01no263_a14.g1 PHD_FILE: MSMg01no263_a14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAATGAAAATGACGGCACAGCATACTCAAACATTTGGGACACAATG
AAAGCAATACTAAGATGAAAACTCATCTCTTCAAATTAGAGAGATCCTAC
ACTAGCAGTACAACACATCTGAAAGCTCTAGATCAAAAAGAAGCAAACAC
ATCCAAGAGGAGTAGACAGCAGGAAGTAAGCAAACTGAGGGCAGGAATCA
ACCAATTAGGAAAAAAAGAGAACAGTATAAAGAATGAACAAAATCAAAAG
TGGATTCTTTGAGAAAATGAGCAAGATAGATAAACCCTTAACCAAACTAA
CAAAAGGTCACAGAGACAGTATCCAAATTAACAAAATCAGAAATGAAAAG
AGAGACAAAACAACAGATACAAAGGAAATTCAAAAAAATCATCACATCTA
TCAAAGCCTATGCTTAGGAAAACTGGAAAACCTAGATCAAACACAATGAT
TATCTAGACAGATACCACATACCCAAGTTAAATTAAGAGCACATAAACTA
TCTAAACAGTCCCATGATTCCTAAGGAAAAGCAAGCAGTTATGAAAACCC
TCCTAACCCCCAAAAATGTCCAGGGCCAGATGGTTTTAATGCAGAATTCT
ACCTGAACTTCAAATAAGAGCTAATACCAATACCCATCANACTAATCCAC
AAAATAGAACACAATGCTAAAAAACCGCAGTTACTTTGATACCTAAACCA
TAC

TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCAATGATATATACTTAATAACAAA
TACAGTTGTTGATAATTACATATCAATATGTTTATAAATGTTATAGAAGT
TGTGCATGCTATGGGTTTCTATGGATACAAAATGAAAACAAAGACCCTAT
GCATTCCAAATTCCTCATTTATTTGGCAAAAAATACACGTGCATTTTCTT
GAAGCATTCTAATGCACAATCTGTTTAAACATAGTACCTATTTTGGGCAT
GTCTTCATTTTTAAAAGACTTTTAAAAACAGCTTGAAAACTGATTTGTAA
TAATGGAGAAAAGCATTGAATATATCTATTCCTCAGTAATTTCAAAGCAT
TATTATGTAAGGAAGCAACTGAAGAGAAGGTTGTAATTTTTTTAAAACTT
CTAAAATGCTTTTCCATCAAGATTCAATATAAGAGTATTTTTATCCTCTT
AAAATCAATTATGTTCTGATTTTCTTTTCCTCTTCAATAAGATATGCAGA
GATTTAGTACTAATGGCTTCAAAAGTTCTTTCTGTTTGTTTTTTTCTTTT
GTTGCTGTTCTGATTGTTGCCCCCCTTTTTCCTCTTTTCCCCCTTTTTCC
TCTCTTTCCTTTTACTTTCTTTCCCCCTTTTTTTTTTTCCCCTTTTTTAT
TTTTCTTCCTTTCCCCTTTTCCTTTCCTCTTTCCCTTGTCTTTCTTCCCC
TTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no263_a14.g1 MSMg01no263_a14.g1 CHROMAT_FILE:
MSMg01no263_a14.g1 PHD_FILE: MSMg01no263_a14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:50 2005
         (510 letters)



>mm_chrX_42115570_42116480
          Length = 911

 Score =  957 bits (495), Expect = 0.0
 Identities = 507/511 (99%), Gaps = 1/511 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcaatgatatatacttaataacaaatacagttgttgataattacatatcaatatgtttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 tcaatgatatatacttaataacaaatacagttgttgataattacatatcaatatgtttat 652

                                                                       
Query: 61  aaatgttatagaagttgtgcatgctatgggtttctatggatacaaaatgaaaacaaagac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 aaatgttatagaagttgtgcatgctatgggtttctatggatacaaaatgaaaacaaagac 592

                                                                       
Query: 121 cctatgcattccaaattcctcatttatttggcaaaaaatacacgtgcattttcttgaagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 cctatgcattccaaattcctcatttatttggcaaaaaatacacgtgcattttcttgaagc 532

                                                                       
Query: 181 attctaatgcacaatctgtttaaacatagtacctattttgggcatgtcttcatttttaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 attctaatgcacaatctgtttaaacatagtacctattttgggcatgtcttcatttttaaa 472

                                                                       
Query: 241 agactttt-aaaaacagcttgaaaactgatttgtaataatggagaaaagcattgaatata 299
           |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 471 agacttttaaaaaacagcttgaaaactgatttgtaataatggagaaaagcactgaatata 412

                                                                       
Query: 300 tctattcctcagtaatttcaaagcattattatgtaaggaagcaactgaagagaaggttgt 359
           ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 411 tctattcatcagtaatttcaaagcattattatgtaaggaagcaattgaagagaaggttgt 352

                                                                       
Query: 360 aatttttttaaaacttctaaaatgcttttccatcaagattcaatataagagtatttttat 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 aatttttttaaaacttctaaaatgcttttccatcaagattcaatataagagtatttttat 292

                                                                       
Query: 420 cctcttaaaatcaattatgttctgattttcttttcctcttcaataagatatgcagagatt 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 cctcttaaaatcaattatgttctgattttcttttcctcttcaataagatatgcagagatt 232

                                          
Query: 480 tagtactaatggcttcaaaagttctttctgt 510
           |||||||||||||||||||||||||||||||
Sbjct: 231 tagtactaatggcttcaaaagttctttctgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 911
Length adjustment: 10
Effective length of query: 500
Effective length of database: 901
Effective search space:   450500
Effective search space used:   450500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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