BAC Information

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BAC

Clone NameMSMg01-263E06
ChromosomeX (Build37)
Map Location 126,516,353 - 126,516,583
singlet/doubletsinglet
Overlap geneDiap2
Upstream geneLOC100040550, LOC100040562, LOC100040570, LOC669120
Downstream geneLOC100040092, LOC665773
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-263E06.T7 (MSMg01no263_e06.b1)MSMg01-263E06.TJ (MSMg01no263_e06.g1)
ACCAG405137AG405138
length831757
length of high quality
(start - end)
248 (35 - 282)285 (82 - 366)
definitionCHROMAT_FILE: MSMg01no263_e06.b1 PHD_FILE: MSMg01no263_e06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:08 2005CHROMAT_FILE: MSMg01no263_e06.g1 PHD_FILE: MSMg01no263_e06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCCAGAGGATCCGC
GGAATTCAAAGCATACTCCTTTGTTATGTGAGACAGATAAGGAGACTATG
ACTCCCCAGTTGAGATTTCTGATCCCAGAGCTTTAACATATACAGGTATA
CCACAGAGAACACCAGTAGTGTTTAAAAGTATAAGTTTGTGAAATTGGGC
TACACATCTGACTTCCACATCTCTTCATTTGTANCACAACTAANTCATGT
ANCATGGAGGTGACCTGAGCTTTCTTTCTGTGCTCAAAAAAAANNNAAAA
GTCTTTAATCTTCTCCCCAACNTTTTTTTTTTTCTATTCCTCCTAACAAC
TTCTTTCCTCCCCTTCTTTTTTTTTTTCCCCCCCCCCCCCCCCTTTTACA
CTTTTTTTCTTTAGGGGGGTGGGGGGGTGTCCCCCCCCCCCCAATAAACA
AAACTCTCTTTTTTTATTCATCCTTCTTTTCCCCCCTCCCTCTTTTTATT
ACTTCTTTTTTAAAAAAACCCTCCTTCCTTTCCTTTTTTTTTAAACATTT
TTCTCACTCCTCACAATTTATTTTTTTCCTCTCCTTTAGTTTTTCCCGAG
TGGTGGTGGGGGGCTTCTTTGCTNTTCTGGANANAAATATATATCACTTA
TGGTGTGGGGGGGGTCTTCCCCCGCTGGCAAATTNTATTATGTGCCATGT
GGAGGGGTCCCTTCTTTTCTCTTTCCTCTTTTTATCCTATTATATTCCTT
CCTTCTTTTTTTTTATCCCCCTTTTCCTTNCCTCCTATTTAACACTTTAT
ACCTATTTTTTCTGTTGTGGGGGGGGGGTGG
NAAATCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAA
TGGCAGAGAAGCACCTGAAAAAATGTTCACCATCCTTAATCATCAGGGAA
ATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGG
TAAGATCAAAAATTCAGGAGATGCTGGCGTGGATGTGGAGAAAGAGGAAC
ACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAAT
CAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCCGAGGATCCA
GCAATACCTCTCCTGGTTTTATATCCACAACACGCCCCAACTGGTAAGAA
GGACACATGCTCCACTATGTTCCCACCAACCTTATTTATAATAGCCAGAA
GCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATG
TGGTACATCTACACTATGGAGTACTACTCAGCTATCATTAAGATTGAATT
TATGAAATTCCTAGTCTAACGGATGGATCTGCAGGTTATCATTCTGAGTG
AGTGTAACTTTTCCACCTTTATTTTCTCTTCCTCATGTTTTTCCCCTGTT
TTCTGTTTTATTAGCTTTTCACCCTATTGTTTACCGCACATTTTTTGATT
TTTCTTCCGTCTCAACTTTCGTTTACCCCTTCAACCATTGTCTGCTTTCC
CCCTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no263_e06.b1 MSMg01no263_e06.b1 CHROMAT_FILE:
MSMg01no263_e06.b1 PHD_FILE: MSMg01no263_e06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:08 2005
         (248 letters)



>mm_chrX_126516136_126516783
          Length = 648

 Score =  391 bits (202), Expect = e-113
 Identities = 223/231 (96%)
 Strand = Plus / Minus

                                                                       
Query: 18  gaattcaaagcatactcctttgttatgtgagacagataaggagactatgactccccagtt 77
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 gaattcaaagcatactgttttgttatgtgagacagataaggagactatgactccccagtt 389

                                                                       
Query: 78  gagatttctgatcccagagctttaacatatacaggtataccacagagaacaccagtagtg 137
           ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 gagatttctgataatagagctttaacatatacaggtataccacagagaacaccagtagtg 329

                                                                       
Query: 138 tttaaaagtataagtttgtgaaattgggctacacatctgacttccacatctcttcatttg 197
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tttaaaagtataagtttgtgaaattgggctacacatctgacttccacatctcttcatttg 269

                                                              
Query: 198 tancacaactaantcatgtancatggaggtgacctgagctttctttctgtg 248
           || ||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 268 tagcacaactaagtcatgtagcatggaggtgacctgagctttctttctgtg 218


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)