BAC Information

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BAC

Clone NameMSMg01-264A06
ChromosomeX (Build37)
Map Location 106,920,721 - 106,921,012
singlet/doubletsinglet
Overlap genenone
Upstream geneBrwd3, 5730416F02Rik, Nsbp1, Sh3bgrl, EG622976, LOC100042831, LOC213474
Downstream geneLOC245573, EG634340, LOC668530
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264A06.T7 (MSMg01no264_a06.b1)MSMg01-264A06.TJ (MSMg01no264_a06.g1)
ACCAG405679AG405680
length722836
length of high quality
(start - end)
292 (72 - 363)---
definitionCHROMAT_FILE: MSMg01no264_a06.b1 PHD_FILE: MSMg01no264_a06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:05 2005CHROMAT_FILE: MSMg01no264_a06.g1 PHD_FILE: MSMg01no264_a06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTATGATTTACCCGATTGGGCTGATATTTCACAATAAATTATTTA
AAATCAACATAATATTTTATTTACTTTCCAAATGTGATATTACAGTATAC
AATTTATCAATAAGAAAAAATTAGTAATAACCTTGAAATATTTAAGTTTT
ATAGATTAAAGTTTAATTTTGACTTAATTTTCAGAATTATTCGCTATATT
CATGCAAGCATAGATGGTTCATTTTAAATGTACATATATATGTTTACATA
TATATGTTCATATGTGTGTGTTTATATATGGATGCTTATATATAGATATA
TATAATGAATTTTTTTTTATGTCCCCCCCCCCCGCCCGAAAATTTGAAGA
GAGTAAAAAAGAAAAGCGTGAAACTCACAATAAATAAAATTAAGTGGAGG
GGCTGCTAAAATTTTCACTAGGTAAAATCTTAACTTCAGATTATTTCTTG
CCTTACACCTTAGCCCTGTATTCCTCAGGGCCTCTCCTTGGCCCCCTGCG
TTGCCTATGCCAAAAGGTTCAATTGGGATCTTTCTAAAAATTCTATGGGA
AAAAATAGCTAAAATTTTTCTGGTGCCAGTTTAGTTTTTTGACATGATCT
TGAAGGTTACCAAAAGGGCACCACCCTTTTAGTCACCCCTTATTTTTCGA
AAACCCCTGGTTCCCCTTGAAN
CCTTTTTTTTTTTTTTTTTNNNTAATGNCAATCTTTNTTTTTTTACTATG
ACAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCATAGAAG
CACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCGAATCAA
AACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCATAA
ATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTC
CTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGT
CTGGCGGTTCCTCAGAATACTGTTTTTAGTACTACCGGAGGATCCAGCAA
TACCTCTCCTGTTTTTATATCCCCACCCCGCCCACCAGGTAATAAGGACT
TATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCTGAAGCTGG
AAAGAACCTAAATGCCCCTTCACAGAGGAATGGATACTGAATATGTGTTA
ATTCTACACGATGTATTACTACTCAGCTATTAATACGAAAGAATTTATGA
AATTCCTAGCCAATTGGAAGGACCTCGGAGGCCATCCTCCTGACTAGAGT
GAACCCCTTCTACAATAAACTCACACATAATGTAATCCACTGATAAGTGG
ATATTAATCCTCATACCTAATGATACCCAACATATTAAGATATAATTTGC
CTAACCACTTGTATCTTCTTTAAGAAATGAAAATTTGACATGTGGAACCC
TATGCCCCCCCCTTAAATTTGGACAATCACACACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_a06.b1 MSMg01no264_a06.b1 CHROMAT_FILE:
MSMg01no264_a06.b1 PHD_FILE: MSMg01no264_a06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:05 2005
         (292 letters)



>mm_chrX_106920521_106921212
          Length = 692

 Score =  549 bits (284), Expect = e-161
 Identities = 290/292 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgggctgatatttcacaataaattatttaaaatcaacataatattttatttactttccaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 tgggctgatatttcacaataaattatttaaaatcaacataatattttatttaatttccaa 260

                                                                       
Query: 61  atgtgatattacagtatacaatttatcaataagaaaaaattagtaataaccttgaaatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgtgatattacagtatacaatttatcaataagaaaaaattagtaataaccttgaaatat 320

                                                                       
Query: 121 ttaagttttatagattaaagtttaattttgacttaattttcagaattattcgctatattc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 ttaagttttatagattaaagtttaattttgacttaattttcagaattattcgttatattc 380

                                                                       
Query: 181 atgcaagcatagatggttcattttaaatgtacatatatatgtttacatatatatgttcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgcaagcatagatggttcattttaaatgtacatatatatgtttacatatatatgttcat 440

                                                               
Query: 241 atgtgtgtgtttatatatggatgcttatatatagatatatataatgaatttt 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgtgtgtgtttatatatggatgcttatatatagatatatataatgaatttt 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)