BAC Information

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BAC

Clone NameMSMg01-265O06
ChromosomeX (Build37)
Map Location 137,301,244 - 137,301,752
singlet/doubletsinglet
Overlap geneMid2
Upstream geneRipply1, Cldn2, Morc4, Rbm41, Gm719, E230019M04Rik, LOC622213, LOC100041446, EG245643, LOC666424, Prps1, Tsc22d3
Downstream geneLOC619612, Tex13, LOC632685, Vsig1, Psmd10, Atg4a, LOC100038961, Col4a6, Col4a5, Irs4, LOC633596
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265O06.T7 (MSMg01no265_o06.b1)MSMg01-265O06.TJ (MSMg01no265_o06.g1)
ACCAG407023AG407024
length800760
length of high quality
(start - end)
512 (96 - 607)245 (76 - 320)
definitionCHROMAT_FILE: MSMg01no265_o06.b1 PHD_FILE: MSMg01no265_o06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:32 2005CHROMAT_FILE: MSMg01no265_o06.g1 PHD_FILE: MSMg01no265_o06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGTTTTTGNTTCTTGTTTNGTTATTANAAANAAATAAAACTNNNTTTCAT
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACCTAGAATGTCTGAGCTGAAAACATATATAAGTGATTTTGTTAC
AATATGAACTTCACTGCATCCAAAGACACACAATGGAATTACATCATAAA
AACACAGCCAGATGCAGTTACTCTTATAAGTAGCAAGAACATCAATGTGG
CATTAAAATTTCTTTTGTAGTCTCAAAACAAGCTTAGCTTCAGTTTGTGC
TTTCTTTAATAAGACAATATAAAAAGTGGAAACAAGCATAAATTGCAGAC
AGAAAATAATTTTCTAGGAGAAAAAGTTCTGAATAGTTAGATGGAGTAAA
GCGACAGCAACCATGTTTATAGAACCATCTTTCTTGACGATGTTAAATGG
TCATGTTCCATTGGCGCAACTGGCTTTAGCTAGAGTTACCCTCTGGTCCC
TTGCCAGTGTTCTATGAAAGTCTTTTAAGTTTACTGAAGTAAATATCTGG
AACTCACCATAGCCCTCTGAGTGATTTGCCACCATTTTGTTTCTTGGAAG
GCATTACGTGCCTCAGAAGCTAGCATTTCAGAGTCAAGCTTTATTGCTTC
CCACAAACCTCATTTAATTTTTCAGTTTATTCAGTAGGATTAACTCTGCC
TGTAATAAAAACTTAAATCTACCTTCAAGAACAACGTTCATTGAAGTTCA
TGAAAGAATGAAATGTAACTGTAAGAATGATAACACGTGCTCCAAAGACA

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCAGCACAAAGGAGGGGAGGGGAGG
GGAGCACAAAGTCCCATGCCTAACTAAGACGCTATTTGCAATTGATAACT
GCTGGGAGAGAGAAAACTGCATTTTCATCAGTGGAGTGACAATGTATATC
AACTATACTCTAGTATAGGCCCAATGCTCAGGAGGCGATTGCCAATACAA
ACTGGACTATAAACAGTCCTGGTTTTGCTGTAAAGAGAGATAAAGAACAT
GAAGTTATGTGGGTACAGAGATAGTAGGGGTGGGGAATCTGGGATAAGTC
AGAGGATGGTTAGATANATTTACCNATACGNGCCCGCCTTTCTGAAAGAA
TAAGTAAAAAAGGGAACCCCACAGTTTAAAAGAATTAAAAGTCATGTCCT
GTAAAAGTTATCTCCCCACTTGACCTCCAACCCTGTCCTTTTGTACCCCT
TAGAGTACTTTTCTCTGAGTCATCACAAGCACCTGTCTTCGTATTGTCCC
ATACTGTGAGCTCCTTGAGGAAGGGGGGGCACATCATTGCTTTTCAGTCT
ATTTTTTCAACTTTTGCTTTTCTGGAATAGAATGCTTTGCCTGAATAATT
GTCTGAACATCTTATTGCTGCTTAATCTCTAAGAAGTCCCTACAAGGCTA
ATAAAAAAAACATGCGTCTCCCGAAAACTCTACACAGAATTCTAATTCTA
AAACTCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_o06.b1 MSMg01no265_o06.b1 CHROMAT_FILE:
MSMg01no265_o06.b1 PHD_FILE: MSMg01no265_o06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:32 2005
         (512 letters)



>mm_chrX_137301040_137301952
          Length = 913

 Score =  946 bits (489), Expect = 0.0
 Identities = 504/509 (99%), Gaps = 1/509 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacctagaatgtctgagctgaaaa-catatataagtgattttgttacaatatgaa 63
           |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||
Sbjct: 713 gaattcacctagaatgtctgagctgaaaagtatatataagtgattttgttacaatatgaa 654

                                                                       
Query: 64  cttcactgcatccaaagacacacaatggaattacatcataaaaacacagccagatgcagt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 cttcactgcatccaaagacacacaatggaattacatcataaaaacacagccagatgcagt 594

                                                                       
Query: 124 tactcttataagtagcaagaacatcaatgtggcattaaaatttcttttgtagtctcaaaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 tactcttataagtagcaagaacatcaatgtggcattaaaatttcttttgtagtctcaaaa 534

                                                                       
Query: 184 caagcttagcttcagtttgtgctttctttaataagacaatataaaaagtggaaacaagca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 caagcttagcttcagtttgtgctttctttaataagacaatataaaaagtggaaacaagca 474

                                                                       
Query: 244 taaattgcagacagaaaataattttctaggagaaaaagttctgaatagttagatggagta 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 taaattgcagacagaaaataattttctaggagaaaaagttctgaatagttagatggagta 414

                                                                       
Query: 304 aagcgacagcaaccatgtttatagaaccatctttcttgacgatgttaaatggtcatgttc 363
           |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 413 aagcgacagcaaccatgtttatagaatcatctttcttgatgatgttaaatggtcatgttc 354

                                                                       
Query: 364 cattggcgcaactggctttagctagagttaccctctggtcccttgccagtgttctatgaa 423
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 cattggtgcaactggctttagctagagttaccctctggtcccttgccagtgttctatgaa 294

                                                                       
Query: 424 agtcttttaagtttactgaagtaaatatctggaactcaccatagccctctgagtgatttg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 agtcttttaagtttactgaagtaaatatctggaactcaccatagccctctgagtgatttg 234

                                        
Query: 484 ccaccattttgtttcttggaaggcattac 512
           |||||||||||||||||||||||||||||
Sbjct: 233 ccaccattttgtttcttggaaggcattac 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 913
Length adjustment: 10
Effective length of query: 502
Effective length of database: 903
Effective search space:   453306
Effective search space used:   453306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)