BAC Information

Click to search

BAC

Clone NameMSMg01-267F11
ChromosomeX (Build37)
Map Location 37,715,644 - 37,715,955
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039715, EG636756, EG636766, EG245391
Downstream geneLOC100039769, LOC385344
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-267F11.T7 (MSMg01no267_f11.b1)MSMg01-267F11.TJ (MSMg01no267_f11.g1)
ACCAG408089AG408090
length746721
length of high quality
(start - end)
316 (45 - 360)281 (433 - 713)
definitionCHROMAT_FILE: MSMg01no267_f11.b1 PHD_FILE: MSMg01no267_f11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:23 2005CHROMAT_FILE: MSMg01no267_f11.g1 PHD_FILE: MSMg01no267_f11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCAATAGCTTCATTTAACTACATAATACATACATACGAACAATACC
ATCCATATTCCAGAATGTATTTAAGAGTGGCGTCAAAGGGTGCCACTCTT
ACATCAGAAATTATAGACAGCCAATGTGTGCTGAGAAATAGAAAGTCAAC
ATGCATACACATATTTATATAAAGATGTGAAGTCAGGGAGAAGGAAGAGT
AAAAGTGTAAAGTGTGAATCTGATAAAAATAAAATGCTATTATGTATGAA
GGTAAAGTGAACTATATTACTATTAAGAATTATTAATAGGCCAGGCAGTA
GTGGCACATGTCCNTTAACTCCCGAANTCGAGACCCAGAGGCAGGCAGAT
TTCTGAGTTCAAGGCAACCTGGTCTACAAAAAGAATTCCAGGACAGCCAA
GGCTACACAGAGAAACCCTGTCTCAAATATATATATATATATATATATAT
ATATATATATAAATTGATTTATAGAGACATTTCTTTAATAAATATGTATG
AATGGCTGATAGATTTATGAACCAAATCAACTCCCTTTATCACCAGTTGT
CATAGAAGTGCTTTTCTCGAGAGCACTGCTATTACCCCTCACTTCTCATT
AAGACTGTGTTCTACTACACCGATTCCATATATCTTAATACCTATTTGCC
ACCATTCTTCTTATAATCTCCCCCACCTATTGTTTGTCACCTAATC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTGAATTTTTTGATATAGGTCTAT
AGTGATATAAACTTTCTTCTTCCGACTGCCTTCTTTGAGTCCCAAAGATT
TTTGTATGTTGTTTTAATTTTTATTGAATTCCAGGATTTAAAAATAAATC
TCTTCTTAGTGTAATCCTTGGCACAATTATCTTTCAGTGGTGTGTTATTT
AGTTCATTTGAGTAATTTAATTTTTATAGTTTCTACTGCTATTTATGGTC
TGCTTTATATCACTGTGGTCATATATAACACAGGCTGTGATTTCAATATT
TGTACTTCNACTTANTTTACCGCCCCCCCCAATTTGACAAACTTCTATGG
ACTGATGAAAAGAATTCTTTATTAAATAAAATAATTTTTGTATCTTTTAG
GTACATTTAATTTATGATGTCATAAATTCATGGGGTTTTCTATTTAGCTT
ACTCCCACATGACCTGTCTCTTGGAGAAAATGTAGTATTAAAATATTCAA
CTATGCCTCTATTAGGGTTAATCTGTGATTTTTGCATCTAATAGTGCTTC
TTTTATGAAACTAGAGCCACTTGTTTGGTGCATATATATTTAAGATTTTA
ATATCCTATTGGATCCTATGGAAAATGGAGGGTTTGATTCAAGCAGCCTG
TAGGACTCTGGGACTTTAGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no267_f11.b1 MSMg01no267_f11.b1 CHROMAT_FILE:
MSMg01no267_f11.b1 PHD_FILE: MSMg01no267_f11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:23 2005
         (316 letters)



>mm_chrX_37715440_37716155
          Length = 716

 Score =  580 bits (300), Expect = e-170
 Identities = 309/312 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcaatagcttcatttaactacataatacatacatacgaacaataccatccatat 64
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 516 gaattctcaatagcttcatttaactacataatacatacatacgaacaataccgtccatat 457

                                                                       
Query: 65  tccagaatgtatttaagagtggcgtcaaagggtgccactcttacatcagaaattatagac 124
           ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 456 tccagtatgtatttaagagtggcttcaaagggtgccactcttacatcagaaattatagac 397

                                                                       
Query: 125 agccaatgtgtgctgagaaatagaaagtcaacatgcatacacatatttatataaagatgt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 agccaatgtgtgctgagaaatagaaagtcaacatgcatacacatatttatataaagatgt 337

                                                                       
Query: 185 gaagtcagggagaaggaagagtaaaagtgtaaagtgtgaatctgataaaaataaaatgct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 gaagtcagggagaaggaagagtaaaagtgtaaagtgtgaatctgataaaaataaaatgct 277

                                                                       
Query: 245 attatgtatgaaggtaaagtgaactatattactattaagaattattaataggccaggcag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 attatgtatgaaggtaaagtgaactatattactattaagaattattaataggccaggcag 217

                       
Query: 305 tagtggcacatg 316
           ||||||||||||
Sbjct: 216 tagtggcacatg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)