BAC Information

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BAC

Clone NameMSMg01-269G21
ChromosomeX (Build37)
Map Location 20,147,501 - 20,264,191
singlet/doubletdoublet
Overlap geneNdufb11, Rbm10, Ube1x
Upstream geneLOC675558, LOC668995, LOC385336, Chst7, Slc9a7, LOC668277, LOC100043954, EG668996, Rp2h, LOC668283, Phf16, Rgn
Downstream genePctk1, Usp11, LOC100043955, Araf, Syn1, Timp1, Cfp, Elk1, Uxt, A230072C01Rik, Zfp182, Spaca5, D930016N04Rik, Ssxa1, Gm1848, EG546268, EG629024, EG331392, Agtr2, EG668997
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-269G21.T7 (MSMg01no269_g21.b1)MSMg01-269G21.TJ (MSMg01no269_g21.g1)
ACCAG409545AG409546
length733737
length of high quality
(start - end)		324 (45 - 368)290 (74 - 363)
definitionCHROMAT_FILE: MSMg01no269_g21.b1 PHD_FILE: MSMg01no269_g21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:54 2005CHROMAT_FILE: MSMg01no269_g21.g1 PHD_FILE: MSMg01no269_g21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,147,501 - 20,147,817)(20,263,904 - 20,264,191)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAACACCATTTGCCACACAATTCTGTTCCCTCCCACTCCAGAAAAT
GGCAGCCGAAAATGCAAAAATGGGGACGAAGGGAGAGGATAATGAGGAAA
ATGAGGAAGGGGTCCTCGACATCTATGTTCATTCATTCTGGACTAGGGTA
GGGTGCTGGTCACCCCACATGTTGAAATTGAGGATCTCAACCCAGAAGGA
AGACAAACCCCCTTACTCTTAAAGGCTGTGGTGATGGTCTCCCTTTTCCC
ACTGCCACTGCCTTTAGTTCAAGATTTATCAAAGTGTTCTTGGCCATCAG
CACTTATTGTCCTTCTGTTGTAGGCCGACCGCCAGGCTTAATGCAAGGGG
TCAGAAGGAACCCTTACGCCGCACTCTGGAGGATGATGCCCAGATCAAGA
TTACAATGTAGCAGTCTTCAGGCCATACTAAAATATAGACCCAGACAGAA
GTCTTTGTCTATCTGTAAACTATTCTGATAGCTAGACTCCTTAGGCACCT
AAGTAAGAAATAACCAACAGAGTGCTTTGCAAATGGCTCAAGGAGAAAGA
TGCTTGCCCCCTACGACTGTGAAAACCTGAGTCCAAAAATTGGAACTCAG
GATTGGAAGGAAAACCACTCTTGAAACGTTGCCTCTGGCTCTCACAAAGA
TCTTTCCTTGTGGGTATGTAGGCCCATGTTTTG

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTTGCCCCATATCTACACTTATTTCT
TTCTGGTGCAGTTCCATTATTCCCAATCCCCACTTGGCTTTATGCCTTTT
GAAAGGGGGGCTTTTAAAATTTGATGTTTATTTGCATTGTTAAAGTCTAT
TCCCAGCCTTGTGTGTGCTTCCTTGCTGAGCTAATAATACCCAGACCTGG
TCAACATTTTGTTGTTCTGTTTTCAGACAGTCTTTTGCAGCCCAGTCTCG
TCTTGAATTCAGTGTAGTCAAGAATTCTATTGAAGTCTGGATTCTTCCTG
CATCCACCACCTTTTGTTCNGTCCCNNACGGNCCCCGNNANANANCTGGN
TTTATTTGNATTCTACCACCCGACCAACATAAAAAAAAAATTTGCATGTG
TGGCAGGCTCATTGATCAACTTTTTTTTTTTTTTTTTAGAAATATCCACT
TCTTTTTTTTTTTTTTTAAAGATTTATTTATTTATTTATTGNAAGTANNC
TGTANNTGTCATCATACACTTCAAAAGAGGAAGACTGATTCCTTTACCCA
TGGTCGTGAACCCCTTGGTGTATTTCCTGAAATTAGTATTCCGGACATTT
CAAAGAAAAACTTGTATTTTTTTTTTTTTTTGTNTCATCCCTCCTGTCCC
TCACCTGTATAATTCGTTTAAACCATTTATATTATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no269_g21.b1 MSMg01no269_g21.b1 CHROMAT_FILE:
MSMg01no269_g21.b1 PHD_FILE: MSMg01no269_g21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:54 2005
         (324 letters)



>mm_chrX_20147297_20148020
          Length = 724

 Score =  590 bits (305), Expect = e-173
 Identities = 314/317 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaacaccatttgccacacaattctgttccctcccactccagaaaatggcagccg 64
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 205 gaattcaaacaccatttgccacacaattctgttccctcccactccagaaaatggcagcag 264

                                                                       
Query: 65  aaaatgcaaaaatggggacgaagggagaggataatgaggaaaatgaggaaggggtcctcg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaaatgcaaaaatggggacgaagggagaggataatgaggaaaatgaggaaggggtcctcg 324

                                                                       
Query: 125 acatctatgttcattcattctggactagggtagggtgctggtcaccccacatgttgaaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acatctatgttcattcattctggactagggtagggtgctggtcaccccacatgttgaaat 384

                                                                       
Query: 185 tgaggatctcaacccagaaggaagacaaacccccttactcttaaaggctgtggtgatggt 244
           |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 385 tgaggatctcaatccagaaggaagacaaacctccttactcttaaaggctgtggtgatggt 444

                                                                       
Query: 245 ctcccttttcccactgccactgcctttagttcaagatttatcaaagtgttcttggccatc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctcccttttcccactgccactgcctttagttcaagatttatcaaagtgttcttggccatc 504

                            
Query: 305 agcacttattgtccttc 321
           |||||||||||||||||
Sbjct: 505 agcacttattgtccttc 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no269_g21.g1 MSMg01no269_g21.g1 CHROMAT_FILE:
MSMg01no269_g21.g1 PHD_FILE: MSMg01no269_g21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:54 2005
         (290 letters)



>mm_chrX_20263704_20264393
          Length = 690

 Score =  518 bits (268), Expect = e-151
 Identities = 283/288 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   acttgccccatatctacacttatttctttctggtgcagttccattattcccaatccccac 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 488 acttgccccatatctacacttatttctttctggtgcagttccattattccaaatccccac 429

                                                                       
Query: 61  ttggctttatgccttttgaaaggggggcttttaaaatttgatgtttatttgcattgttaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ttggctttatgccttttgaaaggggggcttttaaaatttgatgtttatttgcattgttaa 369

                                                                       
Query: 121 agtctattcccagccttgtgtgtgcttccttgctgagctaataatacccagacctggtca 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 368 agtctattcccagccttgtgtgtgcttccatgctgagctaataatacccagacctggtca 309

                                                                       
Query: 181 acattttgttgttctgttttcagacagtcttttgcagcccagtctcgtcttgaattcagt 240
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 308 acattttgttgttctgttttcagacagtcttttgcagcccagtctcatcttgaattcagt 249

                                                           
Query: 241 gtagtcaagaattctattgaagtctggattcttcctgcatccaccacc 288
           ||||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 248 gtagtcaagaatgatattgaagtctggattcttcctgcatccaccacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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