BAC Information

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BAC

Clone NameMSMg01-271K07
ChromosomeX (Build37)
Map Location 67,735,344 - 67,735,649
singlet/doubletsinglet
Overlap genenone
Upstream geneAff2, EG666577, 1700020N15Rik, Ids, 1110012L19Rik, 4930567H17Rik, LOC100040304, LOC628002, LOC628012, BC023829
Downstream geneEG547447, LOC666981, LOC100040409, LOC628053, LOC100040432, EG280121, LOC666993, Ppia-psx_466.1, EG628080, G630014P10Rik, LOC667013, Mtm1, Mtmr1, Cd99l2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-271K07.T7 (MSMg01no271_k07.b1)MSMg01-271K07.TJ (MSMg01no271_k07.g1)
ACCAG411137AG411138
length741747
length of high quality
(start - end)
312 (45 - 356)567 (70 - 636)
definitionCHROMAT_FILE: MSMg01no271_k07.b1 PHD_FILE: MSMg01no271_k07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:33 2005CHROMAT_FILE: MSMg01no271_k07.g1 PHD_FILE: MSMg01no271_k07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTAGATTACCAGGGCTGTGTGTGCAGCAAGCAGAGCAGAGCTCCAG
AGCAGCATGATGTCCTAAGCCCAAGTAGTTCCTGGGGCCATGCAGCACTG
AGGCCACCCCCACCCCCACCCTTGAGGCTGTGGTAACCTGTGGGATGCAT
TCCAAGGAGTTTTAAAGCCCTTTGTCATTCATTCTGTATGGCCCTAGGCA
TCAAAGACAGGGCTGTCAGTAAAATGCTTGCTGCAAAACCATCATGACCT
GGGTTTAGATCCCCTGCACCAGATGGATGTGATGATGCATGCTTACAAAG
CTCCTTTTTCNGTACGCGCACATCGCAGGAGCCCTGAAATTTGCTGGCCA
GATAGTCTTGCCCGCTTGAAAGAAAAGATTGTTTGTTTGTTTGTTTTTTT
GCGGCAGGGTTTCTCTCTATAGCTCTGGCTGTCCTGAAACTCACTTTTTA
GACCAGGCCTTGAACTCAGAAATTCAGAAATTTCGAACTCAGAAATCCTC
CTGCCTGTCCCTCCAGAGGGCTGGGATTAAAGGTGTGCACCACCATGCCT
GGCTCAGATATAGTTTTGAGTATTCAGTGAACTCCAGGTTCAGTGAGATA
AACCTATATAAAAAAATAAGGTTGGTAATGAGAGAGGAAGACATCCACTA
TATTGACCTTTTACTTCCATTAGCATGATCCACATCCTTGG
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGC
ACTTGAAAAAATGTTCAACACCCTTAATCATCAGGGAAATGCAAATCAAA
ACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAA
TTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCC
TCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTC
TGGCGGTTCCTCAGAAAACTGAACATAGTACTACCGGAGGATCCAGCAAT
ACCTCTCCTGTTTTTATATCCAGAACATGCCCCAACAGGTAAGAAGGACA
CATGCTCCACTACGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGG
AAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTA
CATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGA
AATTCCTAGCCAAAGGGATGGACCTGGAGGGCATTATCCTGAGTGAGGTA
ACACATTCACAAAGAAACTCACACAATATGTATTCACTGATAAGTGTATA
TTAGCCCCATACCTAGGATACCCAAGATATAAGATATAATTTGCTAAACA
CATGAAACTCTAGGAGAATGAAGACTGAAGTGTGGACACTATGCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no271_k07.b1 MSMg01no271_k07.b1 CHROMAT_FILE:
MSMg01no271_k07.b1 PHD_FILE: MSMg01no271_k07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:33 2005
         (312 letters)



>mm_chrX_67734938_67735649
          Length = 712

 Score =  491 bits (254), Expect = e-143
 Identities = 293/306 (95%), Gaps = 1/306 (0%)
 Strand = Plus / Minus

                                                                       
Query: 8   ttcctagattaccagggctgtgtgtgcagcaagcagagcagagctccagagcagcatgat 67
           |||||||||||  |||||| |||||||||||||||||||||| ||||||| |||||||||
Sbjct: 712 ttcctagattaagagggctatgtgtgcagcaagcagagcagaactccagatcagcatgat 653

                                                                       
Query: 68  gtcctaagcccaagtagttcctggggccatgc-agcactgaggccacccccacccccacc 126
           ||||||||  || |||||||||||||||||||  |||||||||||||||| |||||||||
Sbjct: 652 gtcctaaggacatgtagttcctggggccatgcttgcactgaggccacccctacccccacc 593

                                                                       
Query: 127 cttgaggctgtggtaacctgtgggatgcattccaaggagttttaaagccctttgtcattc 186
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 cctgaggctgtggtaacctgtgggatgcattccaaggagttttaaagccctttgtcattc 533

                                                                       
Query: 187 attctgtatggccctaggcatcaaagacagggctgtcagtaaaatgcttgctgcaaaacc 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 attctgtatggccctaggcatcaaagacagggctgtcagtaaaatgcttgctgcaaaacc 473

                                                                       
Query: 247 atcatgacctgggtttagatcccctgcaccagatggatgtgatgatgcatgcttacaaag 306
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 472 atcatgacctgggtttagatcccctgcaccagatggatgtgatgatgcatgcttacaatg 413

                 
Query: 307 ctcctt 312
           ||||||
Sbjct: 412 ctcctt 407


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)