MoG+ -Mouse Genome database with high added value-

BAC clone ordering.

BAC Information

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BAC

Clone Name	MSMg01-271L20
Chromosome	X (Build37)
Map Location	83,573,090 - 83,573,744
singlet/doublet	singlet
Overlap gene	EG436212
Upstream gene	Map3k7ip3, Gyk, LOC100042350, LOC629340, LOC100041562, 5430427O19Rik, 1700072E05Rik, Nr0b1, CN716893, LOC667841, LOC236427, EG667852
Downstream gene	Gm41, EG629374, EG637027, Il1rapl1
Link	Open Mouse BAC browser

Click to get alignment info.

name	Map3k7ip3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66724 MGI:1913974
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gyk (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14933 MGI:106594
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	LOC100042350 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042350
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	LOC629340 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:629340
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 69 ESTs, 6 Proteins pseudo : _no_value

name	LOC100041562 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041562
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	5430427O19Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71398 MGI:1918648
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 16 ESTs, 2 Proteins

name	1700072E05Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:73495 MGI:1920745
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Nr0b1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11614 MGI:1352460
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	CN716893 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:434903 MGI:3584456
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC667841 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667841
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	LOC236427 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:236427
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 38 Proteins pseudo : _no_value

name	EG667852 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:667852 MGI:3644372
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 15 Proteins pseudo : _no_value

name	EG436212 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:436212 MGI:3647656
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 29 Proteins

name	Gm41 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:245502 MGI:2684887
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 33 Proteins

name	EG629374 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:629374 MGI:3648342
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 37 Proteins pseudo : _no_value

name	EG637027 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:637027 MGI:3643333
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 25 Proteins

name	Il1rapl1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:331461 MGI:2687319
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 Proteins

name	Map3k7ip3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:61556735 GeneID:66724 MGI:1913974
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : mitogen-activated protein kinase kinase kinase 7 interacting protein 3 transcript_id : NM_025729.3

name	Gyk (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:95147353 GeneID:14933 MGI:106594
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : glycerol kinase transcript_id : NM_008194.3

name	Gyk (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:95147349 GeneID:14933 MGI:106594
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : glycerol kinase transcript_id : NM_212444.2

name	LOC100041562 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271737 GeneID:100041562
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100041562 transcript_id : XM_001476582.1

name	5430427O19Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94407611 GeneID:71398 MGI:1918648
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 16 ESTs, 2 Proteins product : RIKEN cDNA 5430427O19 gene, transcript variant 2 transcript_id : XM_900683.2

name	1700072E05Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142367117 GeneID:73495 MGI:1920745
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1700072E05 gene transcript_id : NM_028554.2

name	Nr0b1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802393 GeneID:11614 MGI:1352460
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nuclear receptor subfamily 0, group B, member 1 transcript_id : NM_007430.3

name	CN716893 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:111378380 GeneID:434903 MGI:3584456
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : expressed sequence CN716893 transcript_id : NM_001033492.2

name	EG436212 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:51772204 GeneID:436212 MGI:3647656
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 29 Proteins product : predicted gene, EG436212 transcript_id : XM_488356.1

name	Gm41 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149271745 GeneID:245502 MGI:2684887
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 33 Proteins product : gene model 41, (NCBI) transcript_id : XM_111935.6

name	EG637027 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94407619 GeneID:637027 MGI:3643333
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 25 Proteins product : predicted gene, EG637027 transcript_id : XM_992998.1

name	Il1rapl1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94407621 GeneID:331461 MGI:2687319
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 Proteins product : interleukin 1 receptor accessory protein-like 1, transcript variant 1 transcript_id : XM_486726.4

name	Map3k7ip3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:61556736 GeneID:66724 MGI:1913974
definition	GO_component : GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 product : mitogen-activated protein kinase kinase kinase 7 interacting protein 3 protein_id : NP_080005.2

name	Gyk (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680139 GeneID:14933 MGI:106594
definition	GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0004370 - glycerol kinase activity [Evidence IDA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0005975 - carbohydrate metabolism [Evidence IEA]; GO:0006071 - glycerol metabolism [Evidence IMP]; GO:0006072 - glycerol-3-phosphate metabolism [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1 product : glycerol kinase isoform 1 protein_id : NP_032220.1

name	Gyk (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:46909579 GeneID:14933 MGI:106594
definition	GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0004370 - glycerol kinase activity [Evidence IDA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0005975 - carbohydrate metabolism [Evidence IEA]; GO:0006071 - glycerol metabolism [Evidence IMP]; GO:0006072 - glycerol-3-phosphate metabolism [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2 product : glycerol kinase isoform 2 protein_id : NP_997609.1

name	LOC100041562 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271738 GeneID:100041562
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001476632.1

name	5430427O19Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:83001627 GeneID:71398 MGI:1918648
definition	codon_start : 1 product : hypothetical protein LOC71398 isoform 2 protein_id : XP_905776.1

name	1700072E05Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13386320 CCDS:CCDS30259.1 GeneID:73495 MGI:1920745
definition	codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC73495 protein_id : NP_082830.1

name	Nr0b1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6671531 CCDS:CCDS30260.1 GeneID:11614 MGI:1352460
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0004872 - receptor activity [Evidence IEA]; GO:0003707 - steroid hormone receptor activity [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0016564 - transcriptional repressor activity [Evidence IDA] GO_process : GO:0030154 - cell differentiation [Evidence IGI]; GO:0030238 - male sex determination [Evidence IGI] [Evidence IMP]; GO:0016481 - negative regulation of transcription [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : adrenal hypoplasia congenita-like protein; adrenal hypoplasia, congenital homolog product : nuclear receptor subfamily 0, group B, member 1 protein_id : NP_031456.1

name	CN716893 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:111378381 CCDS:CCDS30261.1 GeneID:434903 MGI:3584456
definition	codon_start : 1 note : novel protein containing a MAGE family domain product : hypothetical protein LOC434903 protein_id : NP_001028664.2

name	EG436212 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:51772205 GeneID:436212 MGI:3647656
definition	codon_start : 1 product : similar to MAGE-B3 protein_id : XP_488356.1

name	Gm41 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149271746 GeneID:245502 MGI:2684887
definition	codon_start : 1 product : hypothetical protein protein_id : XP_111935.5

name	EG637027 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94407620 GeneID:637027 MGI:3643333
definition	codon_start : 1 product : similar to MAGE-B4 protein_id : XP_998092.1

name	Il1rapl1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94407622 GeneID:331461 MGI:2687319
definition	codon_start : 1 product : similar to interleukin 1 receptor accessory protein-like 1 isoform 1 protein_id : XP_486726.4

name	LOC100042350 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042350
definition	number : 1 pseudo : _no_value

name	LOC667841 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667841
definition	number : 1 pseudo : _no_value

name	LOC667841 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667841
definition	number : 2 pseudo : _no_value

name	LOC667841 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667841
definition	number : 3 pseudo : _no_value

name	LOC236427 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:236427
definition	number : 2 pseudo : _no_value

name	LOC236427 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:236427
definition	number : 1 pseudo : _no_value

name	EG667852 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667852
definition	number : 1 pseudo : _no_value

name	EG667852 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667852
definition	number : 2 pseudo : _no_value

name	EG667852 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667852
definition	number : 3 pseudo : _no_value

name	EG629374 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:629374
definition	number : 2 pseudo : _no_value

name	EG629374 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:629374
definition	number : 1 pseudo : _no_value

name	LOC629340 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149271734 GeneID:629340
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 69 ESTs, 6 Proteins product : similar to Translocase of outer mitochondrial membrane 20 homolog (yeast) pseudo : _no_value transcript_id : XR_032822.1

clone name	MSMg01-450J13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-316B06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-385B08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-278O22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-438L12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-050E09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-075K19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-080C14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-080C13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-272N20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-202N15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-371G04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-401O17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-359J08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-538I21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-398D09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-518E23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-261A10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-485K13
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-338J16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-051I09
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-271L20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-458H16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-166I12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-119K06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-535F04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-280M06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-126B19
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-338P24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-185K15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-273O21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-319N03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-046O19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-279I22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-456E04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-065M18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-132O03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-155H06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-069A15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-376M09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-087A22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-347A03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-292G02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-260J22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-060I09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-290F19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-332M01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-148K08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-388A02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-444M15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-361H14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-203M13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-203N12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-409E01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-338F17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-285K10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-159N16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-327N18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-019L21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-008I04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-230J22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-267A13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-171K14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-322A06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-136J07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-227F09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-064J20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-145P21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-162M12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-210C02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-278I03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-299G13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-151I08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-178B11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-243P02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-234E08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-246A05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-174P20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-094J11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-181J06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-304F22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-255N17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-008P09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-098H15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-332H03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-262M07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-090I15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-220D05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-019C02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-277J24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-327H12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-303P05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070D14
singlet/doublet	singlet
plural/unique	unique