BAC Information

Click to search

BAC

Clone NameMSMg01-272L17
ChromosomeX (Build37)
Map Location 154,397,693 - 154,397,982
singlet/doubletsinglet
Overlap geneCnksr2
Upstream geneLOC434885, Phex, Gm1947, Sms, LOC100041181, EG625253, Mbtps2, LOC100040239, LOC667460, LOC667465, Smpx, Klhl34
Downstream geneEG667483, LOC671033, LOC667487, LOC436243
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-272L17.T7 (MSMg01no272_l17.b1)MSMg01-272L17.TJ (MSMg01no272_l17.g1)
ACCAG411933AG411934
length766737
length of high quality
(start - end)
268 (42 - 309)294 (71 - 364)
definitionCHROMAT_FILE: MSMg01no272_l17.b1 PHD_FILE: MSMg01no272_l17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:57 2005CHROMAT_FILE: MSMg01no272_l17.g1 PHD_FILE: MSMg01no272_l17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCTAACAGATTGCGCAGGGGCTGTCTCTGACTCTGTTACCTGACTTTGGA
TCCCTTTCCCTAAATGGGGCGCTTTGTCTAGTTTCAATAGGAGAAGATGT
GCTTAGTTCTACTGCATCTTGATATGCCAAGATGGATTGATATCTATGTA
GCATCCCCCCTTTTCTGAGGGGAAAGGAAAGACTGGAGAGTGGGGAGAGA
GGAAGGTAGATAGAAGGACTGGGAGGGGAAGAGAGAGGGAAAGNTATGAT
CAGGATGCAAAGTAGATCAATGATTTAATTAAAATAACTACTAGTCTTTG
TCAGGTAGTTTTGTATTAAAGACCTGCCTCGCTGATATGNTAAGTGATTG
GGCATGTGCAATGACAACCTAGGAAAGCTTCAAGGATTTGAACATCTTGT
GTAGATTTAGTTCTGGTCTATCCCCTTCTATGGTTCTGCTACCATGCTCG
GTTCCTTATTATCGTTATTTTCGATTTGTTCCCTCTTTCGTTTTATCCCT
TACTGATTTCATCTTCCTGCCTTATGTTACTTTTGCCCACTATTCCTATA
ATTTCTTTCTTAAAATCATCAATGTTCTCGTCACTTTTTGTTCTCCCTTG
GCCCCGTTTTATCCTCCTTTTATAAAATTTTCACGCCCTTTCTTACTTTT
TACTCTTCGCTCTTACCCCCTATCTTCTTTCTTCTCTTCTTGATCATTCT
TCTTGTCCCTCATCTT
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTGAAAAAGGTAATGAAATTAGGAGTGCAT
CGGCCAACTCCAGATTATTCATAAGATCTCTGTCTATTACCATGGCTTGT
TTGTTTATTTATTTGTTGCTTATTCCATCTGTGATAAAAAGATATTCCTA
AAAACACCCCAAAGTGTATATAGATAATCTTTACATGTCACAGTGAAAAA
GGAGGAAGATGAATTGATGTGTGATGAAAAAGTAAGCTATTGAAGAGATT
GGACAAGGAGTGTAAGTATGAAACTTCTTAAAGAAGAGTGTGGTAGTAGA
AGGCCACTATTTCTGTCCTACCCAACCACCAGAATGAAGTTCTTTGGAGA
ACTATGCTAAAATGCTGAACAAAATCCCATATAAATTAAAAAGTAAAAAT
CCCATTGCACTGTAATTAAGACATTCCATTCAGTATGCTGCTCATGATGA
ACGAATAGATCTACCTCAGTAAATTGAAACTTAAAGGGAACCTGAGTATT
TTGTAAGCTAGTTGCAGAAGTTTAGGACAAGACTGAGCCTGAAAGATGCG
TTATTATAAAGCTTCTACTGATGGAAAAATGAAAATGTGCATTTGGTAGT
TATCGAAAGAATCTTTTGCCATCATTGAGACTATAGTTGTTCATTCATTG
TCTGGTGGTAAAATAGTCAAAATGGTTCTGAATCTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no272_l17.g1 MSMg01no272_l17.g1 CHROMAT_FILE:
MSMg01no272_l17.g1 PHD_FILE: MSMg01no272_l17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:57 2005
         (294 letters)



>mm_chrX_154397493_154398186
          Length = 694

 Score =  561 bits (290), Expect = e-164
 Identities = 290/290 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgaaaaaggtaatgaaattaggagtgcatcggccaactccagattattcataagatctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 ctgaaaaaggtaatgaaattaggagtgcatcggccaactccagattattcataagatctc 431

                                                                       
Query: 61  tgtctattaccatggcttgtttgtttatttatttgttgcttattccatctgtgataaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tgtctattaccatggcttgtttgtttatttatttgttgcttattccatctgtgataaaaa 371

                                                                       
Query: 121 gatattcctaaaaacaccccaaagtgtatatagataatctttacatgtcacagtgaaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 gatattcctaaaaacaccccaaagtgtatatagataatctttacatgtcacagtgaaaaa 311

                                                                       
Query: 181 ggaggaagatgaattgatgtgtgatgaaaaagtaagctattgaagagattggacaaggag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ggaggaagatgaattgatgtgtgatgaaaaagtaagctattgaagagattggacaaggag 251

                                                             
Query: 241 tgtaagtatgaaacttcttaaagaagagtgtggtagtagaaggccactat 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tgtaagtatgaaacttcttaaagaagagtgtggtagtagaaggccactat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)