BAC Information

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BAC

Clone NameMSMg01-273I10
ChromosomeX (Build37)
Map Location 140,472,067 - 140,472,268
singlet/doubletsinglet
Overlap genenone
Upstream geneRgag1, LOC209541, Chrdl1, Pak3, Capn6, Dcx
Downstream geneLOC666628, LOC666633, LOC100039378, LOC100039243, Alg13, LOC100039407, Trpc5, LOC100039436, Zcchc16, LOC666655
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-273I10.T7 (MSMg01no273_i10.b1)MSMg01-273I10.TJ (MSMg01no273_i10.g1)
ACCAG412503AG412504
length721725
length of high quality
(start - end)
318 (41 - 358)291 (73 - 363)
definitionCHROMAT_FILE: MSMg01no273_i10.b1 PHD_FILE: MSMg01no273_i10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:55 2005CHROMAT_FILE: MSMg01no273_i10.g1 PHD_FILE: MSMg01no273_i10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:55 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCTATATGCCCCTGGCTGTCCTGGAACTCACTCTGTAGACCATGCTGGCC
TTGTACTCAGAAATCTGCCTATGTCTGCCTCCCACGTGCTGGGATTAAAG
CTGTGCACCACCAACACCCTGCAAATATTGCCATTTTTAGTGAGATATTT
TTAATGTTTTTTTACTGATTTATGTAAGATATTTTAAATGGTGTGTCCAT
TTTTTTCACGTTGTTGCATTATTCCTTTCAAAGTTTGTTGATTATTGCTC
ACAAATACAGGATTTAACATCAGGACACTGACATTCTTCTTTTTCATTTC
ATTCCTCTCCTTTTCCCCCTCCCCCCCTTATCTGGAAATGGATTTTTCTG
TATAGTCCTAGCCATTCTGAAACATTCTTGTGCAGTTCAGTCTTGAATTC
AAATCTACTGGATTTTATCACCAAATCCTGAGATTAAACCCCTTTCTAAG
CAGACATCAACATTTTTTTTAATTATCTGTCTCACAATACTTATTTAGAA
GATGTCCTCATCACAGTTCCCAAGTAATGCCTTCAGACACTTCTAACTTT
CTGTAGCAACCTTACCATATAGAGCCTATGTAAGGCATCCTGTTGGGTAG
CATTCTGTCTTAAGCTGTCCACATCCAAAGTGTTTGTATTCTTCACAGTG
GCCTGTGAAGTTAGCGTGATA
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAAGAAGAAAGAACTTATGGCATAGCAC
TGAGGCAATGGCACAAGGAAATAACTGGTTGATAGAAAGTGTCCCTGAGT
TTCTGAATGATGCAAGCCTTTATTGCTGCATAGCCAAAGGGAAACAGAAA
TCCTTCACAAAAATCAAAGAGAGGAGCCAAATAAACACCTTTCATCCAGC
AAGATCAAAAACTGCTCTTAGAAAACTGGCAAAGTGTACAAAACAGGCAA
AACAAGTTTCTGTGTCAGTAAAGTAGGATCTTCACTTATAGCCTCAATTT
TACACTTTCTCTTTTTTCCCCCCCCCCCCCCACATGACCTTTCAAAGAAT
CAGCTTGACTAAGTGTTTAATAAACAATCCTGTGCAACTATATTCCAGCT
GCATCATTGGACATAAACTGAATTTTCCATGTGTTGCCACTGATGTGAGC
CATTATCCTGTTGTGCTTCAGGAGATTTATATGACCTTCAACAAGCAATC
CAAATATGAAAATGAATAAGAACCCAACTTGCTAACTGTGACAGACAAAA
CAATTCTTTAAGGCCACTAGTGCTACATTCAGGAGTCCAACTTTGTCTGT
GTTCTGAATCTAGTCAAAAACAGTTAAAATATTGGAAATAACACTTGCAT
CTGTACTATAAATAGATTACTGTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no273_i10.g1 MSMg01no273_i10.g1 CHROMAT_FILE:
MSMg01no273_i10.g1 PHD_FILE: MSMg01no273_i10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:55 2005
         (291 letters)



>mm_chrX_140471782_140472470
          Length = 689

 Score =  221 bits (114), Expect = 5e-62
 Identities = 181/204 (88%), Gaps = 2/204 (0%)
 Strand = Plus / Minus

                                                                       
Query: 86  tgatgcaagcctttattgctgcatagccaaagggaaacagaaatccttcacaaaaatcaa 145
           ||||||||| ||| || ||||  |||||| |||||||||||||| |||||||||||||||
Sbjct: 487 tgatgcaaggcttcatggctgtgtagccagagggaaacagaaattcttcacaaaaatcaa 428

                                                                       
Query: 146 agagaggagccaaataaacacctttcatccagcaagatcaaaaactgctcttagaaaact 205
           |||||| | ||||| |||| |||||||||||||||||||||||| | |||  ||||||||
Sbjct: 427 agagagcacccaaacaaacccctttcatccagcaagatcaaaaaattctcaaagaaaact 368

                                                                       
Query: 206 ggcaaagtgtacaaaacaggcaaaacaagtttctgtgtcagtaaagtaggatcttcactt 265
           ||||| |||| |  |||| ||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 367 ggcaaggtgtgc--aacaagcaaaccaagtttctctgtcagtaaagtaggatcttcactt 310

                                   
Query: 266 atagcctcaattttacactttctc 289
           |||||||||||||||| |||||||
Sbjct: 309 atagcctcaattttactctttctc 286


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 689
Length adjustment: 9
Effective length of query: 282
Effective length of database: 680
Effective search space:   191760
Effective search space used:   191760
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)