TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCCAAAGATTTCCATCCAGGAGGTTTGTTAGCAGCCAGCACTTAC
AAGAACGCAGATGTTTCATACTTGCTGGTAAGATAGAGGGGAGCTGAGCC
AGGTACCCCACTGGTTGCTGCTCATACTCCAGCACTCAGTTAAATGATGA
CAGTGCCATAGGTCGTTCCTTCCTGTAGGCGTAAGGCATGGACCCTCCTG
TGTGCTTCCATAGCTATGTTTGTATACTCATGGCCAGATTAAACTCTAAA
AGCCACTGAAGATGGTGGCCTTTTGAAATTGTCATCTGCCTTATAGTTCA
TGCTCAGTTGCTATCTAAACAGCTAGCAGGTCCTATGAAATTAACTCTTT
GACCAGTTTGATTTGCACCCATTTGCCAACAAGAGCAGCTCAGAGATATC
CTGCCCTTCTTTAGGTCTTTCCTAACAGGGAGGATCACATTGTTATGCAA
AAATCAAAGCCAAACAATTCATAATAAAGAGACTTTTGTAGTTCCTTATT
ATCCATACTATACAGTCTAAAGTACTTAACAGGAGCTGGCATGCCAGCTA
TAATCTGAACACATTCTTCTACCCTTCTGGTCCCATGAGTAGAATGCTTC
CACACTGATCCCGCGGTTTAATCTTCAGGTGCCTGAACCTCCGTAGCCTC
TGTGATCTTGGTACCTAAAAG

ATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAG
AAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAAT
CAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCA
AAAATTCAGGTGACAGCAAATGCTGGCGAGGATGTGGAGAAAGAGGAACA
CTCCTCCATTGGTGNTGGGAGTGCAGGCTTGTACAACAACTCCGGAAATC
AGTCCCGGCGGTTCCTCAAAAAACTGGTACTAACACTACCGGGACGATCA
ACTAGNNCNNNNNTTTTTGGGTGGGGGCCCCGCCCCCCCCCCACAGGTTA
AAAAGGAACTTTGTTCCCCTAATGTTCTTTGCCGCCTTTAATAAAAAATG
CGGCGGAAAAGGNNNAAAACCCTTTTTCCCCCCTAAAGTTNNNTTGGGGG
TGGTTGGGGGGNGNNNNNNNTTTTTCCTTTTTCCCCTTCACCCACCTCCC
CCCTTTATTTAAAAAAAAAATTTTTTTTAAAAATTTCCACCCCCATTGTT
GTGGGCCTTGGGGGGGCCCTTTCCCCTGGGGGGGGGGAACACCTTCTTCC
AAAAAAAACTCCCCCAAAATTTGTTTCTCCCTAAAAAGGGGTATTATTTC
CCCCCCCCCTCTTATCCCCCCAAAAAAAAAAAAAAATTTTTTTTTCCCCC
CCCGGGATCTTCACAAAGAAAGAAGGGAGGG

Query= MSMg01no273_p23.b1 MSMg01no273_p23.b1 CHROMAT_FILE:
MSMg01no273_p23.b1 PHD_FILE: MSMg01no273_p23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:28 2005
         (625 letters)



>mm_chrX_8832551_8833575
          Length = 1025

 Score = 1156 bits (598), Expect = 0.0
 Identities = 616/626 (98%), Gaps = 8/626 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctccaaagatttcc----atccaggaggtttgttagcagccagcacttacaaga 59
           ||||||||||||||||        ||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctccaaagat----gggaatccaggaggtttgttagcagccagcacttacaaga 259

                                                                       
Query: 60  acgcagatgtttcatacttgctggtaagatagaggggagctgagccaggtaccccactgg 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 acgcagatgtttcatacttgctggtaagatagaggggagctgagccaggtaccccactgg 319

                                                                       
Query: 120 ttgctgctcatactccagcactcagttaaatgatgacagtgccataggtcgttccttcct 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ttgctgctcatactccagcactcagttaaatgatgacagtgccataggtcgttccttcct 379

                                                                       
Query: 180 gtaggcgtaaggcatggaccctcctgtgtgcttccatagctatgtttgtatactcatggc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gtaggcgtaaggcatggaccctcctgtgtgcttccatagctatgtttgtatactcatggc 439

                                                                       
Query: 240 cagattaaactctaaaagccactgaagatggtggccttttgaaattgtcatctgccttat 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cagattaaactctaaaagccactgaagatggtggccttttgaaattgtcatctgccttat 499

                                                                       
Query: 300 agttcatgctcagttgctatctaaacagctagcaggtcctatgaaattaactctttgacc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 agttcatgctcagttgctatctaaacagctagcaggtcctatgaaattaactctttgacc 559

                                                                       
Query: 360 agtttgatttgcacccatttgccaacaagagcagctcagagatatcctgcccttctttag 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 agtttgatttgcacccatttgccaacaagagcagctcagagatatcctgcccttctttag 619

                                                                       
Query: 420 gtctttcctaacagggaggatcacattgttatgcaaaaatcaaagccaaacaattcataa 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gtctttcctaacagggaggatcacattgttatgcaaaaatcaaagccaaacaattcataa 679

                                                                       
Query: 480 taaagagacttttgtagttccttattatccatactatacagtctaaagtacttaacagga 539
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 680 taaagagacttttgtagttctttattatccatactatacagtctaaagtacttaacagga 739

                                                                       
Query: 540 gctggcatgccagctataatctgaacacattcttctacccttctggtcccatgagtagaa 599
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 740 gctggcatgccagctataatctgaacacattcttctacccttctggccccatgagtagaa 799

                                     
Query: 600 tgcttccacactgatcccgcggttta 625
           ||||||||||||||||||||||||||
Sbjct: 800 tgcttccacactgatcccgcggttta 825


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space:   624225
Effective search space used:   624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)