XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
CAGAGTTTTATCTGTTAAGAAAATGACTGAATAAAGTGACATTCATAGTA
AATAAATAAATAACGCTGTCTCTTAACATTTAGTATATTTACATTTCAAG
AAATTACTGGGGGCTAGAGAGATGGCTCACTGACTGCTCTTCCAGAGGTC
CCGAGTTCAATTCCTAGCAACCACATGGTGACTCACAGCCATCTGTAATG
GGATCTGATGCCTTCTTCTGGTGTGTCACTGTCATCAGACCCCTTCAGCT
CCTTGGGTACTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGTTCCATCCA
ATAGCTGACTGTGAGCATCCACTTCTGTGTTTGCCAGGCACTGGCATAGC
CTCACAAGAGACAACTATATCCCACTATAGTTTGAATTAATATCACTGGG
ACAGGAGATTTCAAGATAGCCTAGTATTGACTATGTTATGTGGTTGGTAG
AAGTCACACTTCATGCAGAACAAAGAACATGAAAAGAAGCAAGATGAAGA
AAGAGAAACACTAAATATACATTTTGAGGAGAACTGGAACACCAGGAACT
ATAATGGAACTAAGTCCAGTGCTGAAGAAGATTAAAAAAAAAAACGATGA
AAGAAAAGCCTGATGCAAAATGGAATAAAGTGAGCAGTGACCTCAGGGCA
AGACCCCTCCCAGCCGAGCTTCCAGCTTGTGAAAAGGAATCAA

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCTGGAATGGGAGACATTAAAGGAGTTTAAAAT
CCATTTTTGTTCCTATCCCCCCTCTAGAATATTCAGGAAAGGAATTGCTG
CATAACGCCAGTGAAGTGGTCATTAAATCAAGTAAGACTGAAGCAGTTGT
TCATATGTAAACACTAACAGTATTCTCAATTACATGATCAAATGAATGTC
AAATTTCTCCCCTAGTGTCTTTCTAAATACTTCTGCTACACACTATATAA
CAGAAATTTTATAGGAAATAAAAAGGAAAACTTAGTTTAAGAGAAGGGAC
CAATGACTGGATTAAATACCACACACAGTATAGAATTAAATGATTTCACT
CCACAAATTGGACTGGAAGCCACAAACTATAGAATAAAAAAGGAAAAGAA
GAACTGAAGGGCTAGACTCCAAATTAACAAACCGGAGGATATGCTGGGTC
TGTCTCTATGAATTGACTATGGAGAAAGTAATAGGAAGACCTGTCCTGTA
AAACAACATTTCACTGTTTACTGCTGAGACAAGAATAGTAATAGAAAATT
AGAGTAATCTGTATTTATCAAATTAGCGTGTATTTAAAAAATCAAATATT
TGTGTAAATCATTCAGAATTACTCTTGAACACCAATGAAGACATTCATAC
TTACCGAAATATGGTGTGCATACATTGGTCTAGACAGACAA

Query= MSMg01no274_l11.b1 MSMg01no274_l11.b1 CHROMAT_FILE:
MSMg01no274_l11.b1 PHD_FILE: MSMg01no274_l11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:18 2005
         (590 letters)



>mm_chrX_39276134_39277123
          Length = 990

 Score =  611 bits (316), Expect = e-179
 Identities = 319/320 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcccagagttttatctgttaagaaaatgactgaataaagtgacattcatagtaaa 63
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ggaattcccagagttttatttgttaagaaaatgactgaataaagtgacattcatagtaaa 261

                                                                       
Query: 64  taaataaataacgctgtctcttaacatttagtatatttacatttcaagaaattactgggg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 taaataaataacgctgtctcttaacatttagtatatttacatttcaagaaattactgggg 201

                                                                       
Query: 124 gctagagagatggctcactgactgctcttccagaggtcccgagttcaattcctagcaacc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 gctagagagatggctcactgactgctcttccagaggtcccgagttcaattcctagcaacc 141

                                                                       
Query: 184 acatggtgactcacagccatctgtaatgggatctgatgccttcttctggtgtgtcactgt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 acatggtgactcacagccatctgtaatgggatctgatgccttcttctggtgtgtcactgt 81

                                                                       
Query: 244 catcagaccccttcagctccttgggtactttctctagctcctccattgggggccctgtgt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80  catcagaccccttcagctccttgggtactttctctagctcctccattgggggccctgtgt 21

                               
Query: 304 tccatccaatagctgactgt 323
           ||||||||||||||||||||
Sbjct: 20  tccatccaatagctgactgt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space:   568400
Effective search space used:   568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no274_l11.g1 MSMg01no274_l11.g1 CHROMAT_FILE:
MSMg01no274_l11.g1 PHD_FILE: MSMg01no274_l11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:19 2005
         (290 letters)



>mm_chrX_39183033_39183722
          Length = 690

 Score =  530 bits (274), Expect = e-155
 Identities = 286/290 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctggaatgggagacattaaaggagtttaaaatccatttttgttcctatcccccctctag 60
           |||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||
Sbjct: 201 tctggaatgggagacattaaaggagtttaaaatccatttttgttcctattaaccctctag 260

                                                                       
Query: 61  aatattcaggaaaggaattgctgcataacgccagtgaagtggtcattaaatcaagtaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatattcaggaaaggaattgctgcataacgccagtgaagtggtcattaaatcaagtaaga 320

                                                                       
Query: 121 ctgaagcagttgttcatatgtaaacactaacagtattctcaattacatgatcaaatgaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgaagcagttgttcatatgtaaacactaacagtattctcaattacatgatcaaatgaat 380

                                                                       
Query: 181 gtcaaatttctcccctagtgtctttctaaatacttctgctacacactatataacagaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcaaatttctcccctagtgtctttctaaatacttctgctacacactatataacagaaat 440

                                                             
Query: 241 tttataggaaataaaaaggaaaacttagtttaagagaagggaccaatgac 290
           ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 tttataggaaataaaaaggaaaacttagtttaagagacgggaccaatgac 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)