BAC Information

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BAC

Clone NameMSMg01-276H20
ChromosomeX (Build37)
Map Location 98,051,568 - 98,051,887
singlet/doubletsinglet
Overlap geneTex11
Upstream geneEda, Dgat2l4, Otud6a, Igbp1, LOC668257, Dgat2l3, LOC620734, P2ry4, Arr3, Pdzd11, Kif4, Gdpd2, Dlg3
Downstream geneLOC668271, LOC100042392, Slc7a3, Snx12, Mllt7, Gm614, Il2rg, Med12, Nlgn3, LOC100042407, Gjb1, Zmym3, Nono, Itgb1bp2, LOC620837, Taf1, Ogt, LOC620865, LOC668291, Cxcr3, LOC632454, LOC668302, EG212753, 8030474K03Rik, LOC668308, LOC100042465, H3f3a-ps1, EG621083
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-276H20.T7 (MSMg01no276_h20.b1)MSMg01-276H20.TJ (MSMg01no276_h20.g1)
ACCAG414659AG414660
length763759
length of high quality
(start - end)		325 (46 - 370)290 (76 - 365)
definitionCHROMAT_FILE: MSMg01no276_h20.b1 PHD_FILE: MSMg01no276_h20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:26 2005CHROMAT_FILE: MSMg01no276_h20.g1 PHD_FILE: MSMg01no276_h20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACCCTGAAGGCTCTAGATTAGTTACTGTGCTAGTAGATTCTTA
TAAAATGAGGCTAAGCTTCCTCTTTTGTTTCTTGTTTCATATTAGCTCAC
CCTTTCACCTTCTGCCATGTTATACGCTCATTACATGCCTTCATTGATTT
TAAATCCCCAGCCTCTGGAACTATGAGGCAAATTATATAGTAGAAAATAG
CCATCTGAAAAACATGCACAGTATATTTCATGGGGAAAAAATTACCAGAA
AAATCAAAGCAATCATAAGTCATCATAAGTATACTCACTAGGACTGCTGG
AATAATGATACTATTGATAATGATGATGCACCGCACATAATAATAAAAAT
ATTATTATTAAATAATACTGATGATAGTAATAATAAAAACATTGCCAAAG
AGGTAAAGAAATTTGAGGCTCTATGTACTGTCAATGGGAATGTAAAATTG
TTCAAATGCTTTGAAATATAGTTTGGCAGTTTCTCAAATGATTAAGCATA
GTAATCATATGACTAGCAATTCCACTTCTAGGTACATACCCAAGAAAAGT
AAAAGGATGTACAGACAAAAACTTCTATGCAAATGTTTATAACAGCATTA
CTCATAACTATCATAAGAGAAAAACAAGCTAAATGATCAATTGATCAAAA
GATGAATAANATAGTATATTTATAAGATGGAATATTTGATTATGAGAAGT
AATGAAGTATTGA

CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTGAGCAAGGGGTGTTTGGGAGAGG
TGGAAGAACAACTCAAAGTCAATTGTGGGTACAAGCTAACAACTCTGTAG
TCTGCTCAAGATGACTCCCTAGGCAATTCTGTACATAGCTCTTAGCTCTG
TCGTCTGAGACAGCTCTGTACTCGAAACAGCTCTCTCTGCTTAAAATGGC
TCTCTTTGCTTGAGATAGCTCTTGGGTTTTCTGACCAAAATCAGAAATCC
TGCTAGAAAAATCTCTAAAAGAACATTAATAACTTTCTGGATAGCTCTTT
GGTTTTCCAGCCAAAGTCTATTTCCTCGCCCCCCCCCTCTAAACGAGCTG
TTTGTTCTCCAAGCAGTTTTCTCTGGGTAGAGAATATACATCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCGTTACAGACACACAGACCAAAGGCTATTCTTTTATT
TACATATCAATTCAGTCATTTACTCCGTGTTTCTTTTTGATTATCCCACA
AATTAGCATTTTATAACCTTAGCCCTTTGGTTCTTAGAAAAGGACAGCAA
GTACATTAAAAAAAAAAAACACGTACCCAGAAATCTGCTTGCCTTTTTGT
AACACAGTATGCTTACCTGTATGGGATCTAGATCTATCACACCTGTTACT
CAGACTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no276_h20.b1 MSMg01no276_h20.b1 CHROMAT_FILE:
MSMg01no276_h20.b1 PHD_FILE: MSMg01no276_h20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:26 2005
         (325 letters)



>mm_chrX_98051364_98052087
          Length = 724

 Score =  605 bits (313), Expect = e-177
 Identities = 319/321 (99%), Gaps = 1/321 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcaccctgaaggctctagattagttactgtgctagtagattcttataaaatgag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcaccctgaaggctctagattagttactgtgctagtagattcttataaaatgag 264

                                                                       
Query: 65  gctaagcttcctcttttgtttcttgtttcatattagctcaccctttcaccttctgccatg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gctaagcttcctcttttgtttcttgtttcatattagctcaccctttcaccttctgccatg 324

                                                                       
Query: 125 ttatacgctcattacatgccttcattgattttaaatccccagcctctggaactatgaggc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttatacgctcattacatgccttcattgattttaaatccccagcctctggaactatgaggc 384

                                                                       
Query: 185 aaattatatagtagaaaatagccatctgaaaaacatgcacagtatatttcatggggaaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 385 aaattatatagtagaaaatagccatctgaaaaacatgcacagtatatttcatggg-aaaa 443

                                                                       
Query: 245 aattaccagaaaaatcaaagcaatcataagtcatcataagtatactcactaggactgctg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aattaccagaaaaatcaaagcaatcataagtcatcataagtatactcactaggactgctg 503

                                
Query: 305 gaataatgatactattgataa 325
           ||||||||||| |||||||||
Sbjct: 504 gaataatgataatattgataa 524


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 724
Length adjustment: 9
Effective length of query: 316
Effective length of database: 715
Effective search space:   225940
Effective search space used:   225940
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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