BAC Information

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BAC

Clone NameMSMg01-279N05
ChromosomeX (Build37)
Map Location 40,252,799 - 40,253,092
singlet/doubletsinglet
Overlap geneOdz1
Upstream geneThoc2, LOC665488, EG333830, LOC100039838, Birc4, Stag2, LOC100039899, Sh2d1a
Downstream geneGm362, LOC100039977, LOC100039987
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-279N05.T7 (MSMg01no279_n05.b1)MSMg01-279N05.TJ (MSMg01no279_n05.g1)
ACCAG417080AG417081
length773772
length of high quality
(start - end)
545 (69 - 613)296 (77 - 372)
definitionCHROMAT_FILE: MSMg01no279_n05.b1 PHD_FILE: MSMg01no279_n05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:31 2005CHROMAT_FILE: MSMg01no279_n05.g1 PHD_FILE: MSMg01no279_n05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCAACTGGTGACTACTGAATGGCTGAGAAGCACCTAAAAAATGTT
CAGCACCCTTAATCATCAGGGAAATGCAAATCAAACCAACTCTGTGATTC
CACCTCACACCAGTCAGAATGGCTAAGATCAAAAACTCAGGTGACAGTAG
ATGCTGGCAAGGATGTGGAGAAAGAGGAACACTCACTCCTCCATTGCTGG
TGGGATTGTAAGTTGGTACAACTCTGGAAATCAGTTGGCAGTCCCTCAGA
AAATTGGACATAGTTCTACAGGAACATCCAGCAATACCACTCCTGTACAT
ATACCCAGAAGATGTCCCAACATGTGATAAGGACACATGCTCTACTATGT
TCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGT
CCCTCAACAGAAAAATGGATACAGAAAATATGGTACATTTACACAATGGA
TTACTACTTAGCTATTAAAAACAATGAGTTTATGAAATTATCATCAGTGA
TTTTTAAAGTGTTATCAGGAATGGCATTGAGATTTCAAACATTCATATTT
CTTATTTTTTCAGTTTTTACAACCTCTTATGCACAGCCTCTGACTATTAA
TCCTGACTTATCTACATAGTGGACTGTCCATGTTTATGATATTTTGTAGC
CCCTTACATTTACAGCCAATTTATATAANGCTAGTGCACAAGAGTTTAGT
GACAGCCATGTAAGATAAGTCCC
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTACCCCACTGCGAACAAAACAGG
CAGGTTAAAAAAGAAAGCTGACACATACAATAAAGGGCTTACCAATTACA
TAGGCTAGTAACAAGGCCAAAGTCACTGTGATTGCAGTGGCGCTCAAGGC
TGTGCACTTCCAATTGCAGCATCTGTATGGTTTGTTAAAAGTGAAGGCAG
GTCGGGAAAAGGTGCTTCGAGGCAGCGGCCTGGGTGGTGGTGAGTAGACA
GTATTAGATGTCAGAGGGTAGTTCTGACTGGCTGCACTGAAGATAGCAGA
AGAACCAGATCCATGTTTGATCAGGAAATGCCCACCACGGAGAAACAGAA
AAGTTTTCCTATAAATACCAGAGCAAATTGCTAAAATCCCACGAACACTA
CTGATTTCGAACTACCATGCTATGGCAAAACTCATGAGACCAAAAAAGGG
CGAGACAACATTTTCATGTAATTCAGAGTTAGCTGAATTTTCTTTGGTAT
CTATGCCATTTCTTTCTCTTCCTCCTCATCTTCTGTGTCACTCTGTCCCC
CTCACTCCCTCCTTTCCTTCCTTCCTTTCTTGCTGACAAGTAAATGTTGC
TCTTCCAGATTTGATATTTGCAATGCTTTTCTCATTTATTAATCATGATT
CTGAAGAGCTGACTGAATTGTACCATCACATTTTGCTAATTAGAACATTC
TAGATATCAGTGTTATCTTTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no279_n05.g1 MSMg01no279_n05.g1 CHROMAT_FILE:
MSMg01no279_n05.g1 PHD_FILE: MSMg01no279_n05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:31 2005
         (296 letters)



>mm_chrX_40252599_40253294
          Length = 696

 Score =  553 bits (286), Expect = e-162
 Identities = 292/294 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaccccactgcgaacaaaacaggcaggttaaaaaagaaagctgacacatacaataaagg 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 ctaccccactgcaaacaaaacaggcaggttaaaaaagaaagctgacacatagaataaagg 260

                                                                       
Query: 61  gcttaccaattacataggctagtaacaaggccaaagtcactgtgattgcagtggcgctca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcttaccaattacataggctagtaacaaggccaaagtcactgtgattgcagtggcgctca 320

                                                                       
Query: 121 aggctgtgcacttccaattgcagcatctgtatggtttgttaaaagtgaaggcaggtcggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggctgtgcacttccaattgcagcatctgtatggtttgttaaaagtgaaggcaggtcggg 380

                                                                       
Query: 181 aaaaggtgcttcgaggcagcggcctgggtggtggtgagtagacagtattagatgtcagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaaggtgcttcgaggcagcggcctgggtggtggtgagtagacagtattagatgtcagag 440

                                                                 
Query: 241 ggtagttctgactggctgcactgaagatagcagaagaaccagatccatgtttga 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtagttctgactggctgcactgaagatagcagaagaaccagatccatgtttga 494


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space:   197169
Effective search space used:   197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)