Query= MSMg01no280_n23.b1 MSMg01no280_n23.b1 CHROMAT_FILE:
MSMg01no280_n23.b1 PHD_FILE: MSMg01no280_n23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:49 2005
(688 letters)
>mm_chrX_123759938_123761022
Length = 1085
Score = 1096 bits (567), Expect = 0.0
Identities = 655/687 (95%), Gaps = 8/687 (1%)
Strand = Plus / Minus
Query: 5 gaattcactgaaatttactgcttcttttattaaggctgacagtagcctgtggctatcgat 64
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 gaattcactgaaaaatattgcttcttttattaaggctgacagtagcctgtggctatcgat 763
Query: 65 ttaagcatagatatccagaaggcagtgtaatgataattcaatttactttagtggatgtac 124
|||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||
Sbjct: 762 ttaagcatagatatttagaaggaagtgtaatgataattcaatttactttagtggatggac 703
Query: 125 taagttccccctaaagcctacaacctcctcagtcattgggattttattctgtttttgttt 184
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 702 taagttcctcctaaagcctacaacctcctcagtctttgggattttattctgtttttgttt 643
Query: 185 taactgtgtttatagtactatacacagattccttcttctggaatggacctccaatgcaat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 taactgtgtttatagtactatacacagattccttcttctggaatggacctccaatgcaat 583
Query: 245 caggaagaagtttgtac--tatagtttacagaattaatagcaccactgcaagatttgttg 302
|||||||||||| ||| |||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 582 caggaagaagtt--tacattatagtttacagaatttataacaccactgcaagatttgttg 525
Query: 303 acacttccatccccacccccccaaccccacagtaggctccatagcactatacatctcttt 362
||||||||| |||||| || ||| |||||||||||||||||||||||||||||||||
Sbjct: 524 acacttccacccccacacct---acctcacagtaggctccatagcactatacatctcttt 468
Query: 363 gaaagctaaacatcaggcaagaactaagtcctccttagttctaagtgagcaaccaaaggg 422
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 gaaagataaacatcaggcaagaactaagtcctccttagttctaagtgagcaaccaaaggg 408
Query: 423 aatgacaaaggtctgtaggcccctctgaccatgatctcatataaaatatatttaaaatac 482
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 aatgacaagggtctgtaggcccctctgaccatgatctcatataaaatatatttaaaatac 348
Query: 483 atttttttcctgatggttaagcatgaacactttttgatatgatcgctattaaattgtct- 541
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 347 atttttttcctgatggttaagcatgaacactttttgatgtgatctctattaaattgtctc 288
Query: 542 tttttttttttcctgaataccctttacttgggcctttagcccaatttggaattgcatttt 601
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 287 tttttttttttcctgaataccctttacttgggcctttagcccaatttggaattgcattgt 228
Query: 602 tcattttcatggagttaatattttaagttaaattgtacattttgactactaaatctttaa 661
||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct: 227 tcattttcatgaagttaatattttaagttaaactgtacattttgactactaattctttat 168
Query: 662 tgggctcatacctagtagacatctctg 688
|||||||||||||||||||||||||||
Sbjct: 167 tgggctcatacctagtagacatctctg 141
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1085
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1075
Effective search space: 728850
Effective search space used: 728850
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no280_n23.g1 MSMg01no280_n23.g1 CHROMAT_FILE:
MSMg01no280_n23.g1 PHD_FILE: MSMg01no280_n23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:49 2005
(658 letters)
>mm_chrX_123608192_123609249
Length = 1058
Score = 1135 bits (587), Expect = 0.0
Identities = 642/667 (96%), Gaps = 13/667 (1%)
Strand = Plus / Plus
Query: 1 tccagggttaacagaatgtatttccatattatgctgaaaaagcctttctctaatctatat 60
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 196 tccagggttaacagaatgtatttccatattatgttgaaaaagcctttctttaatctatat 255
Query: 61 taatattaatcaatatttctgctccttttttt-ctgttttaaagttttttgaaaactaac 119
|||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 256 taatattaat----atttctgctccttttttttctgttttaaagttttttgaaaactaac 311
Query: 120 tctctctctctctctctct--------ctctgtgtgtgtgtgtgtgtttatgaaggccag 171
||||||||||||||||||| |||| | | | | | ||||||||||||||||||
Sbjct: 312 tctctctctctctctctctgtctctctctctctctctctctctgtgtttatgaaggccag 371
Query: 172 aagaggaagtgatatccactatagttagcttcacaagcagttttgagacattcaacattg 231
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 aagaggaagtaatatccactatagttagcttcacaagcagttttgagacattcaacattg 431
Query: 232 ataataataatcaaattcatgttccctggaagagagacaacttctattaaacactgacat 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 ataataataatcaaattcatgttccctggaagagagacaacttctattaaacactgacat 491
Query: 292 atttctttttgctttgtttctcaagtagacttgatatgcagagtagcttaaggtaactga 351
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 atttcttttagttttgtttctcaagtagacttgatatgcagagtagcttaaggtaactga 551
Query: 352 cagattgagagaatacattctgtttcattgcccctctcatttaacatgttatggtagtat 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 cagattgagagaatacattctgtttcattgcccctctcatttaacatgttatggtagtat 611
Query: 412 gatatatttgacatttaatattgaaacattattaacaatgatagtgcttatcaaacatcc 471
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 612 gatatatttgacatttaatattaaaacattattaacaatgatagtgcttatcaaacatcc 671
Query: 472 atttctaattatttttacataatacatgatttactctccacatattagtttctaaactaa 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 atttctaattatttttacataatacatgatttactctccacatattagtttctaaactaa 731
Query: 532 catcacataaatgtattgggataacatctggacaacatcaaggcaaaaaccaggataaat 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 catcacataaatgtattgggataacatctggacaacatcaaggcaaaaaccaggataaat 791
Query: 592 tcctcttcccaaggtccttaattgaatcacacataaaaatctccaccatataaggtatga 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 tcctcttcccaaggtccttaattgaatcacacataaaaatctccaccatataaggtatga 851
Query: 652 gtcacta 658
|||||||
Sbjct: 852 gtcacta 858
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space: 679104
Effective search space used: 679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
