BAC Information

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BAC

Clone NameMSMg01-289C08
ChromosomeX (Build37)
Map Location 38,667,656 - 38,667,956
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039769, LOC385344
Downstream geneGria3, LOC100039802, LOC676077, Thoc2, LOC665488, EG333830, LOC100039838, Birc4, Stag2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-289C08.T7 (MSMg01no289_c08.b1)MSMg01-289C08.TJ (MSMg01no289_c08.g1)
ACCAG418778AG418779
length727730
length of high quality
(start - end)
315 (48 - 362)301 (79 - 379)
definitionCHROMAT_FILE: MSMg01no289_c08.b1 PHD_FILE: MSMg01no289_c08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:24 2005CHROMAT_FILE: MSMg01no289_c08.g1 PHD_FILE: MSMg01no289_c08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTACCTTTAGATGATTCTATTAGAAATATCCTCATCTTATTGAG
CATAAATCTGCCTCCTTGTAACTTCCACTAACTGTTGATCTTTTCTAGAG
ACAGGGGCCAAAGGTCAAGTATTTACTTCATATTCTAATAATAGACCACC
AAACATCTATAGATTTGAGTAGAACACCTTTTCTTCAAGCTAATTACCCC
TAGTACCAGCTGTTCTTTTGATGTATAACATGGGCCTAGGTCCAGGCACA
TCATCACTCTAAGCATCTTCCTCTGAATATGTTACGGTTTGTCAAAACCT
TATGTTTGTAGCCTTTTTGTATGTACCCCCCCCCGTGAGATTGAACCTAT
CAAAAAGCAAACAAGTACCCCCCCAAAATGATGTTTCACCTCCATTTTGG
TATACACAAGACATATTTGTCAGTACCACCTAGAATGCTAATGATATTTT
TTTTGACAAGCCCGCAATGTGGTTCTATAAAATATACTCCTACTTTGAGG
TCTTGAATGTATAAGCCTATGCGTTAATAGGAATTTCTGGGGGCTGGATA
TGGTTCAGTGGTTGTGAATACATACTGCTTTTTCAGAGGATCTCATTTAG
GTTCCCAGCACCCATGATGGGCAGTTAACAGCCACCCGTAGCTCCAACTC
TAGGGACTCCAATGCCCTCTTCTGGTC
CACCAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTGGATAATGAAAAGCAAAAG
GTGATTTTTCTCTTTAATGAAAAAATGGAAATAATATTTTCTGCAGCAAG
AAACAAAATGATTTGAGAAACCCAAAGTGACAGGCAGAGAGTGATTGACA
TGCATAGCCCAGAATATGGGTCCGGTTCTTCAAGGGTAGCAAACCAAATA
TTTTAGCCCAACGTTCTTTCACATCTGTCTTCAGAATGTTGACATTGACA
GTTCATCACAGAAAGGGTTTCTCCTGCCACAAGTAAACTGAGCCTGAACC
TGGATGAACAGAGTCTTGTTTTATGTATCACATCCGCACAACAAATTAGC
CTTCATGATTTTTCTCGTTTGCCCCCCAAGCGACAGTTTTTGAAAATCAG
ACTCTGCCGAGAAAAAAAAAATTGACCTTTCAGTCTACAAACATACCATT
TAATTTACAAGAGAGGTAAACCCTTTTGAATTGTATTTACCCAGTTACTT
TAATAAAGGTTAGGCCTTTCCAAAACAATTGTAAATGTGGCATTTAGCTT
CTCATATTTTCTGAAGCATTACTTGAATCTTGGGACTCAAAAGAAACAAC
CACACAAATAATAATAAAGCAATATTACGATTTCTCCCTGGAGGGAAGTA
AAATGCACCCTTTACAGATTACAATTACGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no289_c08.g1 MSMg01no289_c08.g1 CHROMAT_FILE:
MSMg01no289_c08.g1 PHD_FILE: MSMg01no289_c08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:24 2005
         (301 letters)



>mm_chrX_38667456_38668156
          Length = 701

 Score =  551 bits (285), Expect = e-161
 Identities = 297/301 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttggataatgaaaagcaaaaggtgatttttctctttaatgaaaaaatggaaataatatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttggataatgaaaagcaaaaggtgatttttctctttaatgaaaaaatggaaataatatt 260

                                                                       
Query: 61  ttctgcagcaagaaacaaaatgatttgagaaacccaaagtgacaggcagagagtgattga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttctgcagcaagaaacaaaatgatttgagaaacccaaagtgacaggcagagagtgattga 320

                                                                       
Query: 121 catgcatagcccagaatatgggtccggttcttcaagggtagcaaaccaaatattttagcc 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catccatagcccagaatatgggtccggttcttcaagggtagcaaaccaaatattttagcc 380

                                                                       
Query: 181 caacgttctttcacatctgtcttcagaatgttgacattgacagttcatcacagaaagggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caacgttctttcacatctgtcttcagaatgttgacattgacagttcatcacagaaagggt 440

                                                                       
Query: 241 ttctcctgccacaagtaaactgagcctgaacctggatgaacagagtcttgttttatgtat 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 441 ttctcctaccacaagtaaactgagcctgaacctggatgaacagagtcttggcttatgtat 500

            
Query: 301 c 301
           |
Sbjct: 501 c 501


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 701
Length adjustment: 9
Effective length of query: 292
Effective length of database: 692
Effective search space:   202064
Effective search space used:   202064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)