BAC Information

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BAC

Clone NameMSMg01-289I10
ChromosomeX (Build37)
Map Location 110,565,957 - 110,566,231
singlet/doubletsinglet
Overlap geneDach2
Upstream geneEG623341, 2010106E10Rik, Zfp711, Pof1b, LOC623412, EG623428, LOC100039112, Chm, EG664918
Downstream geneLOC237016, EG664945, EG634881, LOC100039201
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-289I10.T7 (MSMg01no289_i10.b1)MSMg01-289I10.TJ (MSMg01no289_i10.g1)
ACCAG419053AG419054
length722728
length of high quality
(start - end)
310 (50 - 359)275 (440 - 714)
definitionCHROMAT_FILE: MSMg01no289_i10.b1 PHD_FILE: MSMg01no289_i10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:51 2005CHROMAT_FILE: MSMg01no289_i10.g1 PHD_FILE: MSMg01no289_i10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTCTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTGTTTAGCTCTGAGCCCTATTTTTTTTTAATGGGGTTAT
TTGATTTTCTGGAGTCCACCTTCTTGCGTTCTTTATATATATTGGATATT
AGTCCTCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATTTGTTGG
TGGCCTTTTTGTTTTATTGATGGTGTCTTTTGCCTTACAGAAGCTTTGCA
GTTTCATGAGTTCCCATTTGTCAATTCTTAATCTTACAGCACAAGCCATT
GATGTTCTATTCAGGAATTTTTCCCCTGTGCAATAACTTCGAGGCTTCTC
CCCACTTTCTTTTTTAAGTTCNAGACCTNCCCCTTTATGTGGAGCTCTTT
GATACACTTAGACCCCCCCCTACAAAAAAAAAAAAGGAATGGATCGATTC
ACATTCTTCTACATGATAACCACCAGTTGTGCCAGCACCATTTGTTGAAA
ATGCTATCTTTTTTCCACTGGATGGTTTTTAGCTCCCTTGTCGAAGATCA
AGTGACCATAGGGCGTGGGTTCATTTCTGGGTCTTCAATTCTATTCTATT
GGTCTACTTTTCTGTCACTATACCAGTACCATGCCGTTTTTATAACACTT
GCTCCGCATTAAAGCTTTAGGTCAGGCATGGTGATTCCCCCTGAGGTACT
TTTATTTCTTGACAATATGTTT
NCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACAGTCAAAATGTAGGTAGG
CACTTCAATTACCATCCTATTATTTTACCCAAATGTTACACATACATTTT
ATGGCACTGACTCTCATTCAATCTCCATCCACTTTTGACTTTTCTCTAAC
TTCTACTTTCAGTCACATGAAGGGCATTTGTTACTTTGTACTCTATCACT
ATTCTGTGCAATCTTATGATCCAATCCCAATTCATAAATATAAATGATCA
CTAATAGGAAATAGTGAAATCATGGATATCCCAATTGACAAGAAACGTCA
TATGGATAGATCGGTTCTATATTAACCATCCGCATTTCACTTTTTTTTAT
CAGTAAGCAAAATTACAGGCCCCCACCCCCAAAATTTTAATGGCTTCCCT
TTCCTGTCTTCACAAGTATAATATAGAGAACAAGATTATGGAAATTGGGC
TGAATCTGTAAAGGCTCCAAGACATTCCCAGGGAGTTGATTTTTAAAAAA
TAAATACATAAATACCTGTTAACAGCTTGTTTCCTTGTCATTTGCCTCTT
CCTTCTAAAAGGAGAGTGTAGCAAAAAATAAATAAATAAAACTGGTTAAT
TGAGAATTTTAGTTAGTCAGATTCCAATTATTCAAGGCTTTATTATTTTC
ACAAAATATCTCTTAAATTGTGCAGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no289_i10.g1 MSMg01no289_i10.g1 CHROMAT_FILE:
MSMg01no289_i10.g1 PHD_FILE: MSMg01no289_i10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:51 2005
         (275 letters)



>mm_chrX_110565757_110566431
          Length = 675

 Score =  532 bits (275), Expect = e-155
 Identities = 275/275 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   atggcttccctttcctgtcttcacaagtataatatagagaacaagattatggaaattggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 atggcttccctttcctgtcttcacaagtataatatagagaacaagattatggaaattggg 416

                                                                       
Query: 61  ctgaatctgtaaaggctccaagacattcccagggagttgatttttaaaaaataaatacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 ctgaatctgtaaaggctccaagacattcccagggagttgatttttaaaaaataaatacat 356

                                                                       
Query: 121 aaatacctgttaacagcttgtttccttgtcatttgcctcttccttctaaaaggagagtgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 aaatacctgttaacagcttgtttccttgtcatttgcctcttccttctaaaaggagagtgt 296

                                                                       
Query: 181 agcaaaaaataaataaataaaactggttaattgagaattttagttagtcagattccaatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 agcaaaaaataaataaataaaactggttaattgagaattttagttagtcagattccaatt 236

                                              
Query: 241 attcaaggctttattattttcacaaaatatctctt 275
           |||||||||||||||||||||||||||||||||||
Sbjct: 235 attcaaggctttattattttcacaaaatatctctt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 675
Length adjustment: 9
Effective length of query: 266
Effective length of database: 666
Effective search space:   177156
Effective search space used:   177156
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)