BAC Information

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BAC

Clone NameMSMg01-289L02
ChromosomeX (Build37)
Map Location 86,677,059 - 86,677,344
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667891, EG245506, LOC667911, LOC100041707, EG436213, LOC667919, LOC100041727, LOC667934, Pet2
Downstream geneEG629419, 4932429P05Rik, LOC633246, Nanog-ps1, 4930415L06Rik, EG547215, Gm370, LOC194615
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-289L02.T7 (MSMg01no289_l02.b1)MSMg01-289L02.TJ (MSMg01no289_l02.g1)
ACCAG419176AG419177
length746738
length of high quality
(start - end)
54 (254 - 307)292 (75 - 366)
definitionCHROMAT_FILE: MSMg01no289_l02.b1 PHD_FILE: MSMg01no289_l02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:03 2005CHROMAT_FILE: MSMg01no289_l02.g1 PHD_FILE: MSMg01no289_l02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATAATTTGCGGCCGCTCAANGAGGACGATAGTTCGNGACCCGCCNGAANN
NNNNGNNCATTGGCGGCACCGNGGGGNNAANGGGGNNANNNAANNNNCNG
AAGNCCACCNNCTTGTTTTCGCAAANAAGAGGGAGANNAGNCCCCNANCN
GAANNAGGANAGGNAAAGAACCNNNCCCAANCNGNNGGAGGNCNNNNNGA
CAAANCGACGGNGNCNAACGCCCAGCAGAAACANNGGAGCCNCACAAGGT
TTTTTTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTC
AGGAATTCCCCCCCTTTTTCTTGTTTTTCAAGGCNCGGCCCCACAGACAC
CGCGAGAATTTTTTTTTTCCCCCCCCCCCACGCGAAGTTCCTTGATCCAC
TTACATTTGACCTTACCACAAGGAGATAAATAAGAAACGATTCGCAGGCT
TCTACATGAGCACAACCAGTCGTGCCAGCTCCAATTGCTGAAAATGCTGA
CTTTCTTCCACTGGATGGGTTTAGTTCCCTTGTCTAACAACAAGGGACCA
CAGGTGTGCACGCTCATTTTCCGGGTCTTCAATTCCAACTCCATTTGCCC
CATTTGGTCTGGCCCTATTATCCCGTATTCTTGGACGTTTTCATTCACAA
ATGGCTCCGGACAAATATTTTTTTTTTTTTTTTCGGCCTTGGAATCCCAC
CCAAAATGTCCCTTTTTATCCCTGGAAGAAAAAATTTTTTTGCTAA
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAACAAAATGAAATCAACTAGGCACTT
AAGGTCCTGGAGTAGATAGCCAAAACAATGAATACAAATTTATTTTGGGT
GATTTATTGTCAGCTTTTTTTGGGCATTTTTAACCTTGCTGATATTGTTC
TTGATGTTTTCTGGATTTATGTTTCTATAGTGTGTGTGCGTGTCTGTGTG
TGTGTGTGTGTGTCTGTGAGTTTTCTGGGGTATGTATTTCTGATCCTTTT
GATCATCATTTTTTTATTTTTAATTATTTTCTGGTTTGTTTGTGAGGTTG
CTTATTTTCTATGTTTTGACAGACACACCCACCTGCAGTTGATTGAGTTA
GGAGGTAGAAATGATCCTGCACAAGATGAAGGAGAACAAAATACATTATA
TTTAAAAATAATCATTTTCAATTGGAAATTCAATGAGAATAATTAGATTC
TATCGGAGAGGAAAGAAGAACTGGACACAAAATAATGATCAATCCATGAG
ATAATTTGAAAAATATGAAAGACTTATTTTATGCAGATCTACAAAAAAGA
AAATAAATTGATAATTTTCATGAAAAATAAAATATATGGAAAGAATTTTC
AAGAAGGGATATTTGACATAAGCTCTTTTTTTTCTCAATAATTGGAAAGG
ATTTTGCAGAAAAAATAGTATCCTTTCCCCCTTGTAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no289_l02.g1 MSMg01no289_l02.g1 CHROMAT_FILE:
MSMg01no289_l02.g1 PHD_FILE: MSMg01no289_l02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:03 2005
         (292 letters)



>mm_chrX_86676859_86677550
          Length = 692

 Score =  503 bits (260), Expect = e-147
 Identities = 281/290 (96%), Gaps = 5/290 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacaaaatgaaatcaactaggcacttaaggtcctggagtagatagccaaaacaatgaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacaaaatgaaatcaactaggcacttaaggtcctggagtagatagccaaaacaatgaata 260

                                                                       
Query: 61  caaatttattttgggtgatttattgtcagctttttttgggcatttttaaccttgctgata 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 caaatttattttgggtgatttattgtcagctttgtttgggcatttttaaccttgctgata 320

                                                                       
Query: 121 ttgttcttgatgttttctggatttatgtttctatagtgtgtgtgcgtgtctgtgtgtgtg 180
           | || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 tcgtgcttgatgttttctggatttatgtttctatagtgtgtgtgtgtgtctgtgtgtgtg 380

                                                                       
Query: 181 tgtgtgtgtctgtgagttttctggggtatgtatttctgatccttttgatcatcatttttt 240
           |||||    |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtgt----ctgtgagttttctggggtatgtatttctgatccttttgatcatcatttttt 436

                                                             
Query: 241 t-atttttaattattttctggtttgtttgtgaggttgcttattttctatg 289
           | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ttatttttaattattttctggtttgtttgtgaggttgcttattttctatg 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)