BAC Information

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BAC

Clone NameMSMg01-290A22
ChromosomeX (Build37)
Map Location 66,251,297 - 66,251,961
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040194, EG236844, LOC385372, LOC627888, LOC434788, Fmr1, Fmr1nb, LOC100040244, EG627927, LOC666882, LOC671950, LOC100040255
Downstream geneAff2, EG666577, 1700020N15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-290A22.T7 (MSMg01no290_a22.b1)MSMg01-290A22.TJ (MSMg01no290_a22.g1)
ACCAG419442AG419443
length759757
length of high quality
(start - end)
316 (45 - 360)663 (76 - 738)
definitionCHROMAT_FILE: MSMg01no290_a22.b1 PHD_FILE: MSMg01no290_a22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:30 2005CHROMAT_FILE: MSMg01no290_a22.g1 PHD_FILE: MSMg01no290_a22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCAACTGAGGAATACTGAATGGCTGAGAAGCACCTGAAAAAAATAT
TCAACATCATCAGGGAAATGCAACTCAAAACAGCCCTGAGATTCCACCTC
ACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAACAGATGTTG
GTGAGGATGTGGAGAAAGAAGAATACTCTTCCATTGCTCGTGGGATTGCA
AGCTGGTACAACCACTTCGGAAGTCAGTCTGGAGGTTCTCAGAAAATGTA
TACATAGTAATACTGATAGATCCAGCAATACCTCTCCTGGGCATTTACAC
AGAATTTGTTCCTTCTTGTAATAACGCACACATGCTCCACTATGTTCATA
GCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGTCCCCC
AACAGAGGAATGGATACAGAAAATGTGGTACATTTTTACACTGGAGTACT
ACTCAGCTATTAAAAACAATGAATTTATGAAATTCTTAGGCAAATGGATG
GATCTGGAGGATATCCTCCTGAGTGAGGAACCCCATTCCCAAAGAACACA
CTTGATATGCCCTCATTGAAAAGTGGAAATTAACTCAGAAACTTAGACTT
TTCCAGGATACAATTTTGCAAAGCCATTGAAATTCAGGAGAAAGGAAAAC
CTAAGTGTGGAAAACTTCTTTCTTCTTAGAAAGGGGAACAAAATTACCCT
TGGAAGGAG
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATAATTTCCACTGAAATAGTGTGAA
AAAGAAAGGCAGCATTCAGAGTGCTCCAGGTTTTAAATGATTAACTTTAT
AGGAGAAAGGTCTGGGCATGAAACACCCTCTTCAGGGGGCCCTTTGATGT
CAAGTGCAGCATGCTACCGACATTAGTGAATAGAGTTTACAGAGGTATAG
GAGAGGTGACTATGTCTTATCATCTTCTACTTTGATTGAAGTGCCTGTGA
CTGAAGCCACCTGCCACAGAACCCCAGTGCCATACACCCAGTATAAAAAA
ATCCCTTCTGAGATGTTATGCGTACCTGGTACCAAAAATACCCTCTTACT
CAATCACCTAAGCTTTTCTAGCAGACATAATCATCCTATGCTTTCCCCTC
TGTGTCTTTCACACTAGCCAAATGTCAGTTATTTCGGATCTCTATTTCAC
TTTACATGCTGTCTCCCTCTATTAGCATGACCTTTCTGCTCTCACATTTT
TCTCAGCATAATCCCAGTGAATAACTATTCTCCATCCATGCCTACCATGA
TATTTCAAATCACTCATAGCTTTCTATTCCTGTTTGTTTCACTAAATGAT
AAAGTCTTAGATGATAGGAACTGTCTTTGGTCCATCTTTTGGCCTTGGGA
CCTAGGCTCTGTCGGATTGGCACCTATTGGATGCATGATTAGTCAGCAAA
TAGGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no290_a22.g1 MSMg01no290_a22.g1 CHROMAT_FILE:
MSMg01no290_a22.g1 PHD_FILE: MSMg01no290_a22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:30 2005
         (663 letters)



>mm_chrX_66251097_66252161
          Length = 1065

 Score = 1232 bits (637), Expect = 0.0
 Identities = 658/665 (98%), Gaps = 2/665 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataatttccactgaaatagtgtgaaaaagaaaggcagcattcagagtgctccaggtttta 60
           ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct: 865 ataatttccactgaaatagtgcgaaaaagaaaggcagcattcagagtgctgcaggtttta 806

                                                                       
Query: 61  aatgattaactttataggagaaaggtctgggcatgaaacaccctcttcagggggcccttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 aatgattaactttataggagaaaggtctgggcatgaaacaccctcttcagggggcccttt 746

                                                                       
Query: 121 gatgtcaagtgcagcatgctaccgacattagtgaatagagtttacagaggtataggagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gatgtcaagtgcagcatgctaccgacattagtgaatagagtttacagaggtataggagag 686

                                                                       
Query: 181 gtgactatgtcttatcatcttctactttgattgaagtgcctgtgactgaagccacctgcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gtgactatgtcttatcatcttctactttgattgaagtgcctgtgactgaagccacctgcc 626

                                                                       
Query: 241 acagaaccccagtgccatacacccagta-taaaaaaatcccttctgagatgttatgcgta 299
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 625 acagaaccccagtgccatacacccagtattaaaaaaatcccttctgagatgttatgcgta 566

                                                                       
Query: 300 cctggtaccaaaaataccctcttactcaatcacctaagcttttctagcagacataatcat 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cctggtaccaaaaataccctcttactcaatcacctaagcttttctagcagacataatcat 506

                                                                       
Query: 360 cctatgctttcccctctgtgtctttcacactagccaaatgtcagttatttcggatctcta 419
           |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 505 cctatgctttcccctctgtgtcgttcacactaggcaaatgtcagttatttcggatctcta 446

                                                                       
Query: 420 tttcactttacatgctgtctccctctattagcatgacctttctgctctcacatttttctc 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tttcactttacatgctgtctccctctattagcatgacctttctgctctcacatttttctc 386

                                                                       
Query: 480 agcataatcccagtgaataactattctccatccatgcctaccatgatatttcaaatcact 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agcataatcccagtgaataactattctccatccatgcctaccatgatatttcaaatcact 326

                                                                       
Query: 540 catagctttctattcctgtttgtttcactaaatgataaagtcttagatgataggaactgt 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 catagctttctattcctgtttgtttcactaaatgataaagtcttagatgataggaactgt 266

                                                                       
Query: 600 ctttggtccatcttttggccttgggacctaggctctgt-cggattggcacctattggatg 658
           ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||
Sbjct: 265 ctttggtccatcttttggccttgggacctaggctctgtagggattggcacctattggatg 206

                
Query: 659 catga 663
           |||||
Sbjct: 205 catga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1065
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1055
Effective search space:   688915
Effective search space used:   688915
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)