BAC Information

Click to search

BAC

Clone NameMSMg01-291C04
ChromosomeX (Build37)
Map Location 53,358,324 - 53,358,623
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666161, EG666199, 4930527E24Rik, LOC626274, LOC625210, LOC100039055, LOC100039066, LOC676623, EG626315, LOC666268, LOC666097, LOC666107, LOC626348, LOC100039146, LOC100039160, EG630825, LOC100039187
Downstream geneLOC673263, 3830403N18Rik, LOC626439, Gm773, LOC100039254, LOC100039266, LOC100039276, 1600025M17Rik, Zfp449, LOC100039317, 6330419J24Rik, 6530403M18Rik, LOC100039346, Ddx26b, Gm648, Tmem32, Slc9a6, LOC100039342, Fhl1, Mtap7d3, Gpr112, Brs3, Htatsf1, Vgll1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-291C04.T7 (MSMg01no291_c04.b1)MSMg01-291C04.TJ (MSMg01no291_c04.g1)
ACCAG420219AG420220
length725723
length of high quality
(start - end)
310 (48 - 357)346 (79 - 424)
definitionCHROMAT_FILE: MSMg01no291_c04.b1 PHD_FILE: MSMg01no291_c04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:51 2005CHROMAT_FILE: MSMg01no291_c04.g1 PHD_FILE: MSMg01no291_c04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCTACTCAAAGTCATTGGAGACAACAGCAAATCTGTTTTGTCCG
AATGGAGAATGGATGATTATTTGTGCTCCATTAAAAAGGTCAATAAATTG
ACTAATTTGATTCCTGCCTGTATATTTGTGTGTGCTTTGTACTTTTTTCT
GCTTTGTGTTGTGCTCTGTGTTCTTGATTATTACCTCTAGGGTCCTTACC
ATACTTGCAAAATGAAACATTTCTCAGTTGGAAAAGCTCTCATTTTTTTC
CTCTGTATACAATATGATTCTTTAAAAAATAAGTTTTTGATTCCTTTGTA
CTAATAGTATTATTAAAATTTCTGCCAAGACACTTTTCATTGAAAATACA
GTTTTTCATTCAATACATTCAGATTACTGTCCCCCCAAATCCTTCTACAA
CCTCTCCACTTCTCGACCCACCCAAATTCACACTTTTTCTTTCTCGCTTT
ATTAAAATACAAACAGGCATCTAAATAATAATGATACTATTAATGATACT
AATGACAATAATAATGAAGAATAAGATACAAAATAAACAAATGAACCAGA
ACAGAACAAAGCAAACATAATGAAAAAGAGGCAAAGAAAAAGCACAAGAA
ATATACATGTAGACACAGAGACATATATGTTCACAAACACTCAGAAATCC
CATAAAAACAAAAAAGACTGCAAAC
TTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTACTCAAAGTCTTTGGAGACA
ACAGGGATTTTATTAGGTTCTCATGGAGAATGGGAGAGTGTTTGTGCTCC
ATTAAAAAGGTACTCACATTCACTATTTTGATGCCATTCTTTCTATTTGA
GTGTGCTTTGTACTTTTGTCTGCTATGTGTTGTGTTCTGTGTTCTTTGTT
ACTAACTCTAGGGTTCTTCCCATACTTGGAAAATGAAAGTCAGTTTGAAA
ACCTTTCATATTTGTTCTCTGTATAGAAACACTCTCTCTCTCTCTCTCTC
TCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCCCCCCCTCACAATTTGAATTTTCAAGACAGTGTT
TCTCTGTGTATCCATGTTGTTCTGGAAATCACCCTGTAAACCAGGTTGGC
CTCTAACTTATAAATTCACCTGTCTCTGCTTTTCGAGTGCTGGGTTTAAA
GGTGTTTGCCACCACCACTTGCAAATATGATTCTCTTACCAAATTATATT
ATGAGTCCTTTGTACCTCTAATGATACCTAAATTTCAAGGAAGGCACTTT
TAATTGCACAATGCATCTTTCTGACAAACCAAATGGTGTATTCCCTGGAC
ATTCTGAAGGTTGCACATTGACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no291_c04.b1 MSMg01no291_c04.b1 CHROMAT_FILE:
MSMg01no291_c04.b1 PHD_FILE: MSMg01no291_c04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:51 2005
         (310 letters)



>mm_chrX_53358120_53358826
          Length = 707

 Score =  232 bits (120), Expect = 2e-65
 Identities = 257/306 (83%), Gaps = 9/306 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctactcaaagtcattggagacaacagcaaatctgttttgtccgaatggagaatg 64
           |||||||||| ||||||| |||||||||||||  | || | ||||| | |||||||||||
Sbjct: 504 gaattcctacccaaagtctttggagacaacagggattccg-tttgttctaatggagaatg 446

                                                                       
Query: 65  gatgattatttgtgctccattaaaaaggtcaataaattgactaatttgattcctgcctgt 124
           |  || |||| |||||||||||||||||||  || ||| |||| |||||| |||| ||||
Sbjct: 445 ggggagtattagtgctccattaaaaaggtccttacattcactagtttgatgcctgtctgt 386

                                                                       
Query: 125 atatttgtgtgtgctttgtacttttttctgctttgtgttgtgctctgtgttcttgattat 184
            |||||| ||||||| ||||||||| |||||| ||||||||| |||||||| |||  || 
Sbjct: 385 ctatttgagtgtgctatgtacttttgtctgctgtgtgttgtgttctgtgttattggctac 326

                                                                       
Query: 185 tacctctagggtccttaccatacttgcaaaatgaaacatttctcagttggaaaagctctc 244
           || ||||| |||||||||||||||||||||||||||     ||||||| ||||| || ||
Sbjct: 325 taactctacggtccttaccatacttgcaaaatgaaa-----ctcagtttgaaaatctttc 271

                                                                       
Query: 245 atttttttcctctgtatacaatatgattcttt-aaaaaata--agtttttgattcctttg 301
           || ||  ||||||||||||||||||||||||| ||||||||  ||||| |||  ||||||
Sbjct: 270 atattcgtcctctgtatacaatatgattctttaaaaaaatatcagtttatgagacctttg 211

                 
Query: 302 tactaa 307
           ||||||
Sbjct: 210 tactaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 707
Length adjustment: 9
Effective length of query: 301
Effective length of database: 698
Effective search space:   210098
Effective search space used:   210098
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)