BAC Information

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BAC

Clone NameMSMg01-292K02
ChromosomeX (Build37)
Map Location 114,912,635 - 114,912,924
singlet/doubletsinglet
Overlap geneLOC665066
Upstream geneLOC100039300, EG665045, LOC100039319, LOC624284
Downstream geneEG624388, ENSMUSG00000072994, LOC100039551, Tgifx1, LOC665087
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-292K02.T7 (MSMg01no292_k02.b1)MSMg01-292K02.TJ (MSMg01no292_k02.g1)
ACCAG421301AG421302
length726748
length of high quality
(start - end)
188 (425 - 612)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no292_k02.b1 PHD_FILE: MSMg01no292_k02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:45 2005CHROMAT_FILE: MSMg01no292_k02.g1 PHD_FILE: MSMg01no292_k02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGAGCCGCGGAATTCTCACCT
TAGCCAAAAAGAATGGCAGAGAAGCACCTGAAAAATTGTTCAACATCCTT
AATTATTTGGGCAATGCAAATCAAAACAAACCTGAGATTCTACCTCACAC
CAGTCAGAATGGCTAGACCAAAAATTCAGGTGACAGCAGATGCTGGCAAG
GATGTGGATAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAAGCTT
TTACAACCACTATGGAAATCAGTCTGGTGGTTCCTTAGAAAATTGGACAT
AGTACTATTGTAGATTCCAGCAATACCTCTCCTGGGCATATATCCAGATT
TTTTTCCCTCCGCCCCCCACCGACACATGCTCCACTATGTTCATAGCTGC
CTTATTCACAATAACCAAAAGCTGGAAAGAACCCAGATGCCCCTCAACAG
AGGAATGGATATAGAAAATGTGGTACATTTACACAATTGAGTACTACTCA
GCTATTAAAAAAATGGATTTATGAAATTCCTAGGCAAATGGATGGACCTG
GAGGGTATCATCCTGAGTGAGGTAACCCAATCACAAAGGAACTCATACAA
TATGTACTCACTGATAAGTGCATATTAGCCCAAAACTTACGATATCTTTT
ATGTATTATACAATTTGCTAAACACATGAAACTCAAGAATAATGAAGACT
GAACCGTGGACACTATGCCCCTACTN
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCGAATGGAGGAGGAGGAGTTTCT
GAGGTATCCACCTAGTAGAGCAGTTATTGAGAGTTGATGGTTGCTTAGTG
AAGGAGTGTCTCTTTTCTTTGTTAATTTGATTTCACATATATTGCTCGAA
TCCCAGTGAATGGACCCAGAATCTTATGTGTGGGAAGTAATAATAGGACT
CAAATAATAGGACTAATAACAAAAAATAAAACCTTTAAAAATTGAAACTT
AGAGGGAGATGGAATGGCAGATGTTAGAAGGAGTTCAAGAGAGGTAGTGG
TAAATGGATTTGATTATTATATATCCCCCCCCCGTTTTTATCTTTCTTCC
CCCCTACTTTTTTTTTCCCCCCTTCAAAAAATCAAAAAACCCCTGATGGC
TGGGCTATTTCTTTCGGTTTTATCTATTTTTTTGCTTTTGTCCTTTTTTA
TAACTTTTTTTTACCCCTATTGCAAATTATTTTTTTTCTGATCTTTTTTC
TCCTTTTTTTTATATTTTCCGTTTTCATTATTTTTTTGTTTCTTACTCCC
CCCCTTTTTTTATATTTGTCTCTTCTTTCTACTTCCCCCTCTTTTTTTCC
TTTTCTTTTTTCTTCCCTCTCTTTTTTCTGTTCCTCCTTTCTTCCACTCC
CCTCCCCCTCCTTCTTTTTCTCTTTTTTTCTTTTTCCTCCCTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no292_k02.g1 MSMg01no292_k02.g1 CHROMAT_FILE:
MSMg01no292_k02.g1 PHD_FILE: MSMg01no292_k02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:45 2005
         (292 letters)



>mm_chrX_114912435_114913126
          Length = 692

 Score =  545 bits (282), Expect = e-160
 Identities = 288/290 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcgaatggaggaggaggagtttctgaggtatccacctagtagagcagttattgagagttg 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 490 tcgaatggaggaggaggagtttctgaggtacccacctagtagagcagttattgagagttg 431

                                                                       
Query: 61  atggttgcttagtgaaggagtgtctcttttctttgttaatttgatttcacatatattgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 atggttgcttagtgaaggagtgtctcttttctttgttaatttgatttcacatatattgct 371

                                                                       
Query: 121 cgaatcccagtgaatggacccagaatcttatgtgtgggaagtaataataggactcaaata 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 370 cgaatcccagtgaatggacccagaaccttatgtgtgggaagtaataataggactcaaata 311

                                                                       
Query: 181 ataggactaataacaaaaaataaaacctttaaaaattgaaacttagagggagatggaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ataggactaataacaaaaaataaaacctttaaaaattgaaacttagagggagatggaatg 251

                                                             
Query: 241 gcagatgttagaaggagttcaagagaggtagtggtaaatggatttgatta 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 gcagatgttagaaggagttcaagagaggtagtggtaaatggatttgatta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)