BAC Information

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BAC

Clone NameMSMg01-292K12
ChromosomeX (Build37)
Map Location 76,641,554 - 76,641,744
singlet/doubletsinglet
Overlap geneLOC100041373
Upstream genePrrg1, LOC667679, LOC667684, 4921509A18Rik, LOC667700, EG546337, EG629116, LOC636082, EG667736
Downstream geneEG636104, 2410003J06Rik, LOC667749, LOC211702, LOC667755, LOC211705, LOC654474, LOC629153
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-292K12.T7 (MSMg01no292_k12.b1)MSMg01-292K12.TJ (MSMg01no292_k12.g1)
ACCAG421319AG421320
length749751
length of high quality
(start - end)
194 (125 - 318)550 (77 - 626)
definitionCHROMAT_FILE: MSMg01no292_k12.b1 PHD_FILE: MSMg01no292_k12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:47 2005CHROMAT_FILE: MSMg01no292_k12.g1 PHD_FILE: MSMg01no292_k12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAAGATCCGCGGA
ATTCTTTCAAGTTGGCAAACTAACTTGCACATGGAAGAATATTGTTCTTT
GTAAATCACAAAAGAGAATGGACCCATTTTTATAGAAAGTGATCATTATT
AAGCAAAAATTATGCATTTCATTCTTTTATTAGAAGAAACTATTTAACAA
ATTTTACTCAACATTAGTAAAATTATATCACTCAACATTTGCTGTTATTT
TTTTTAAAAAGAAACAAATATCTAAAACACTCTTAAATATTTCACTGCAT
GTTAGCTTTGGTTCCAAAGATTTTCTTACCTGTCCCACCACAACATCATA
TAGAGTACTAGAGATTGTTACCCNTTCCTCGCCGAGGTATGTAGGGAGCC
TCTCATACAAGTAAACACCCAGCATAAAAATAAACACTGGGTTTGGATCA
CAGATGTCGATGGCCTAGGTTCATAAGAGAAAGACATAAGTTGTAGGGTA
TATAGATAAAACACAGGGAGTAAATGAAGTATAATAGTTGCTAACTTACT
TCAAAACACTCATAAGTGTTTCTAATGAACAATGGAATGGAAATATAGGT
ATAAAACCAGAATAATATTCTTAATTTGAAGCTCCTGACATATTAAAGGA
CGAGTTGTATATTATCATAATGCCGACCTCATAGCCTTTGGACCCCTTTA
ATAAAAAAAATATTCTGAAGTGTAAAAAACCTCTTTATTTTTTATTGCT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCATTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATC
CAGCAATACCTCTTCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAG
AAGGACACATGCTCCACTACGCTCATAGCAGCCTTATTTATAATAGCCAG
AAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGGAAA
TGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAG
TGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGTTAG
GTGGATATTAGCCCAAAACCTAGGATACCCCAGATATATGATACAATTTG
CTAAACCCATGAAACTCAAGAAAAATGATGACTGATTGGGGGACTCTATG
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no292_k12.b1 MSMg01no292_k12.b1 CHROMAT_FILE:
MSMg01no292_k12.b1 PHD_FILE: MSMg01no292_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:47 2005
         (194 letters)



>mm_chrX_76641352_76641944
          Length = 593

 Score =  356 bits (184), Expect = e-103
 Identities = 190/192 (98%), Gaps = 1/192 (0%)
 Strand = Plus / Plus

                                                                       
Query: 3   tttttatagaaagtgatcattattaagcaaaaattatgcatttcattcttttattagaag 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 203 tttttatagaaagtgatcattattaagcaaaaattatgcatttcattcttttattggaag 262

                                                                       
Query: 63  aaactatttaacaaattttactcaacattagtaaaattatatcactcaacatttgctgtt 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aaactatttaacaaattttactcaacattagtaaaattatatcactcaacatttgctgtt 322

                                                                       
Query: 123 attttttttaaaaagaaacaaatatctaaaacactcttaaatatttcactgcatgttagc 182
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 attttttt-aaaaagaaacaaatatctaaaacactcttaaatatttcactgcatgttagc 381

                       
Query: 183 tttggttccaaa 194
           ||||||||||||
Sbjct: 382 tttggttccaaa 393


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 593
Length adjustment: 8
Effective length of query: 186
Effective length of database: 585
Effective search space:   108810
Effective search space used:   108810
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)