NNTTTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCAATAAAATCTATCCTATAAGCCAGTCTTTTTACCCCT
CACTACTGTCATAGTAATCAAGTGAAGCAATCACAAAGGTCCAAGTTTCA
GTTGACACTTCATCACACTCAACTGCAAATGATTGCTTATTTAATTCGGA
GCCCATTCCATACAATGTTTTACGAGCATTGATTTTCCCACTCATTAGCA
AGGGCTCAGCTCTGTGCTCAGCCCCCAAAGCACAAAGAACTAATGTCCTG
TTTGATAGTTTATCTCCTGGTATCACCAGTCTCACCAAACATGTAACAGT
CTGGACTGAACTGGAAGAAATATTTTTTCTACTCCCACCCGCTATAGATT
TAAACTTATTCACGATGCAAAACACCCCCACACAAAGAAAAATAATCAAG
ATGTCTGGGAGCGCGCCCTCACATTCGCCCGTTTACCAAGATTGGNCGCT
GCACAATCCTTGTTGTTTCTATAGTCGGC

TTTTTTCCCCNNNNNCCCTCTATGXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTGG
CCCCAAGGACTGAGGCTAGGGTAGTTGAAGTGGGAATGGAGAGAGAGGAT
AGGGAGATGAAAGAGAGAGAAAGGAGATTATCAGCACAGACCCCCCCTCC
CCTACCTCCCCCCCCTCCCCCTCCCTCCCCCTCCTCCCCTCTCCCGTTTT
CTCTCCCCTCCCCTCCCCCCCCTCTTTTTTTCCTCCCTCCCCCTCTCTCC
TCCTCCCCCCCCCCCCTCTCCCCCCCCCCCCCCCCCCCGTCCACCCTATC
TTTTCCTCCTCCCCCTTTTTCCTCTCTCCTCCCTCCCCTCTCTTTTCTTT
TTCCTCCTCTCCCTCCCTCCCTCTTCCTCCCCCCCTTCCCTCTCCTCCCC
CCTCCTCCCCCTTCCTCTTTGTATTTTTTCCCCCCCCCCCCCCCCCCCCC
CCCCCTTTATATTTGTTTTCTTTTTTCTGCCTCCTTTCCCCTCTCCTCCT
CTTTCCTCCCCCCCCCCCCCCCCCNNNNACTTAAACCCCACACCTCTTTT
TGCCTCTTCCCCTGCCGCCGTCCTCCCCTCCCTCTCCCCCCTCTCCCACC
CTCCTTTCCCCCTTCCCCCC

Query= MSMg01no293_a04.b1 MSMg01no293_a04.b1 CHROMAT_FILE:
MSMg01no293_a04.b1 PHD_FILE: MSMg01no293_a04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:28:15 2005
         (316 letters)



>mm_chrX_76791905_76792620
          Length = 716

 Score =  603 bits (312), Expect = e-177
 Identities = 312/312 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaataaaatctatcctataagccagtctttttacccctcactactgtcatagtaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaataaaatctatcctataagccagtctttttacccctcactactgtcatagtaa 264

                                                                       
Query: 65  tcaagtgaagcaatcacaaaggtccaagtttcagttgacacttcatcacactcaactgca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcaagtgaagcaatcacaaaggtccaagtttcagttgacacttcatcacactcaactgca 324

                                                                       
Query: 125 aatgattgcttatttaattcggagcccattccatacaatgttttacgagcattgattttc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aatgattgcttatttaattcggagcccattccatacaatgttttacgagcattgattttc 384

                                                                       
Query: 185 ccactcattagcaagggctcagctctgtgctcagcccccaaagcacaaagaactaatgtc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccactcattagcaagggctcagctctgtgctcagcccccaaagcacaaagaactaatgtc 444

                                                                       
Query: 245 ctgtttgatagtttatctcctggtatcaccagtctcaccaaacatgtaacagtctggact 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctgtttgatagtttatctcctggtatcaccagtctcaccaaacatgtaacagtctggact 504

                       
Query: 305 gaactggaagaa 316
           ||||||||||||
Sbjct: 505 gaactggaagaa 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)