BAC Information

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BAC

Clone NameMSMg01-293F05
ChromosomeX (Build37)
Map Location 53,269,712 - 53,270,176
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666151, EG666161, EG666199, 4930527E24Rik, LOC626274, LOC625210, LOC100039055, LOC100039066, LOC676623, EG626315, LOC666268, LOC666097, LOC666107, LOC626348, LOC100039146, LOC100039160, EG630825, LOC100039187
Downstream geneLOC673263, 3830403N18Rik, LOC626439, Gm773, LOC100039254, LOC100039266, LOC100039276, 1600025M17Rik, Zfp449, LOC100039317, 6330419J24Rik, 6530403M18Rik, LOC100039346, Ddx26b, Gm648, Tmem32, Slc9a6, LOC100039342, Fhl1, Mtap7d3, Gpr112
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-293F05.T7 (MSMg01no293_f05.b1)MSMg01-293F05.TJ (MSMg01no293_f05.g1)
ACCAG421808AG421809
length767794
length of high quality
(start - end)
643 (45 - 687)296 (77 - 372)
definitionCHROMAT_FILE: MSMg01no293_f05.b1 PHD_FILE: MSMg01no293_f05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:42 2005CHROMAT_FILE: MSMg01no293_f05.g1 PHD_FILE: MSMg01no293_f05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACCATAGATCACAAACATCCTATTCAGATTTCTCTCTCTTTATCAA
TTTTTTCTTGCTGTAGTGGTGGTGATTTTTTAAGAGAGCCTTATAAGAAT
TAATTTACTCTTAGATGAATTTGGACCTTTTGAGAAAGATTGTATTCCTA
CACCATTTTTCGCTCATGAGAAAATGGGGAGGTGGTACATGGCTTAGAGT
ATAAGATCATTGGCCCCTGTGCACAGGTTCCAGGATTCAATTACCAGGGC
CAATCTTGTTTGTCACAGCCACAGGTAAGTGCTGTTTCAGGGGATCTAAT
ACTATCTAACTTCTGATCTCTATACGGCCCAGTTTAGTGCACAGGCAGCA
GACACACCCCTTCAGGTAAAACATTCATAAAATAGAAATAATGAAAATTC
TACAGTTTACCAATTGCCATATAAAACTTGATTTCCAAATGATCACACAT
ACTATTAGGAGAGGACCTCAAAATGTGGATGTAGGTCAAAAATTTTGATA
TATTTGATACTTATTTTTTCTTTCTTTTCTGTTTTACACCACCTAGGACC
CCACATCCCAATGACCTGGAGGAGAGTAAGCCAGAGTTCTTCCATAGTCT
TTGCTTCAGTTCCTGTCTCCACTTACCAGCTCTGATTAAGGTGTTGTCCA
GACTTCCCTAGATAACACAGTTTNAAACCTGAAAGTTGAAAACAGAAAGA
ATCCATTACATCATTTG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAGCCCAGGATCCGCTCAAGGAC
TACCTAGAATATTGGTGAAGGACAGGGAACAAAGTTGGATATTGCTTAGA
TATTTGCCAAGTCATTACTTGGAGGCACTTATAATAAAACAACATTGAAA
GAAGTCACAAAGATTCAATCACTTACTAATGTAAGGACAAGTTTGATGCA
TTTTTTCCAGGATGGTTCCTGAAGACTTAGTTTCCATTAACTTTTTGACT
AGGGACTGTGTCTAAATATTTAGAACTGTCACGGGAGTCACTACTGGGGT
TTGTGTTCCAATGGCTGGTGTGCGTTTGTGCGCGCGCGTGTGTGGGTGTG
TGAGTGCGTGTGTGTTTGCGCGAGTGTTGTGTGAGAATATGAGAGCGTGT
GCGGGGGGCCCTCTTTCCCTTCTCTTTCCGTCCTCTCTCTTTTTCCCCCT
TCTTCCTTGCTCCCCCCCCTTTTCTCCTCCCTTTTCTTTTTTCCTCCTTT
TATCCCCTTCTTCTTCTCTCCTTGTTTCTTCCTTCTCCCTCTTAACCCTC
CTTCTCTCCCCTTCTTTCTTACTCAACTTCCGCTCCTTTTCTATTTCCCA
CCTAACCCCATTCTTGGCCCGATCTATTTTTTTTTCCCTTTCCTGTTCTA
ATCTTTGCCACGCCGCTATTCTCAAATCCTACCTACATGCTTTAACACCC
CTTCCACCTTTACCTAAACATCTCTCTCTGTAACTAGTTGAGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no293_f05.b1 MSMg01no293_f05.b1 CHROMAT_FILE:
MSMg01no293_f05.b1 PHD_FILE: MSMg01no293_f05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:28:42 2005
         (643 letters)



>mm_chrX_53269135_53270177
          Length = 1043

 Score =  273 bits (141), Expect = 3e-77
 Identities = 392/485 (80%), Gaps = 35/485 (7%)
 Strand = Plus / Minus

                                                                        
Query: 115  tcttagatgaatttggaccttttgaga-aa-gattgtattcctacaccattt--ttcgct 170
            |||||||| |||||| ||||||||| | || | || | || |||||||  ||  ||| ||
Sbjct: 1042 tcttagataaatttgaaccttttga-ataatg-ttttgttactacacc--ttccttctct 987

                                                                        
Query: 171  catgagaaa--atggggaggtgg-tacatggcttaga-gtataagatcattgg--cccct 224
             ||||||||  ||  |||| ||| ||||||||| | | |||||||| ||||||   ||||
Sbjct: 986  -atgagaaaacat--ggagctggatacatggctca-atgtataagagcattggttgccct 931

                                                                        
Query: 225  gtgcacaggttccaggattcaattaccagggccaatcttgtttgtcacagccacaggtaa 284
             || | ||  ||| |||||||||| |||||||| | | ||| ||||||||||||| ||||
Sbjct: 930  -tgaagagaatcctggattcaattcccagggcccaccctgtgtgtcacagccacatgtaa 872

                                                                        
Query: 285  gtgctgtttcaggggatctaatactatctaacttctgatctctatacggcccagttta-g 343
            || || || |||||||||| |||||| |||||       ||| | | || |||| |||  
Sbjct: 871  gtcctattccaggggatctgatactagctaac-------ctccacagggtccag-ttaca 820

                                                                        
Query: 344  tgcacaggcagcagacacaccccttcaggtaaaaca--ttcataaaatagaaataatgaa 401
            |||| || || ||||||||||||||||||||||| |  |||||| |||||||||||||||
Sbjct: 819  tgcatagccaacagacacaccccttcaggtaaaa-atgttcatacaatagaaataatgaa 761

                                                                        
Query: 402  aattctacagtttaccaattgccatataaaacttgatttccaaatgatcacacatactat 461
            || | |||||||||||||||| ||| || |||||||||||  |||||||||||||| |||
Sbjct: 760  aactatacagtttaccaattggcatgtagaacttgatttctgaatgatcacacatattat 701

                                                                        
Query: 462  taggagag--gacctcaaaatgtggatgtaggtcaaaaattttgatatatttgatactta 519
             |  ||||   || ||||||| ||||||||||||||  |||||||||| |||||||||||
Sbjct: 700  ca--agagcaaacttcaaaatatggatgtaggtcaaccattttgatatgtttgatactta 643

                                                                        
Query: 520  ttttttctttcttttctgttttacaccacctaggaccccacatcccaatgacctggagga 579
            |||||||||||||||||||||| |||| ||||| |||||| ||||  |||| |||||| |
Sbjct: 642  ttttttctttcttttctgttttgcacctcctagaaccccaaatcctgatgaactggagaa 583

                 
Query: 580  gagta 584
            |||||
Sbjct: 582  gagta 578


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space:   653889
Effective search space used:   653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)