BAC Information

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BAC

Clone NameMSMg01-294B22
ChromosomeX (Build37)
Map Location 100,662,297 - 100,662,590
singlet/doubletsinglet
Overlap geneTsix, Xist
Upstream geneHdac8, Phka1, LOC668331, LOC100042516, EG668339, Dmrtc1b, EG668343, LOC100043105, EG668349, EG382233, Dmrtc1c, EG668360, LOC668357, 1700031F05Rik, EG668369, Dmrtc1a, 1700011M02Rik, 1700018G05Rik, EG331480, EG668382, LOC668387, EG245545, LOC100042610, EG621205, Nap1l2, LOC668217, 4930519F16Rik, LOC100042615, Cdx4, LOC671052, Chic1, Tsx
Downstream geneRps12-ps1, LOC668406, LOC676246, ENSMUSG00000043661, LOC668412, LOC668415, B230206F22Rik, Cnbp2, LOC100042640, Slc16a2, EG621381, EG668426, LOC668430, Rnf12, C77370, Vcp-ps, EG621542
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294B22.T7 (MSMg01no294_b22.b1)MSMg01-294B22.TJ (MSMg01no294_b22.g1)
ACCAG422378AG422379
length726736
length of high quality
(start - end)
321 (50 - 370)295 (82 - 376)
definitionCHROMAT_FILE: MSMg01no294_b22.b1 PHD_FILE: MSMg01no294_b22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:43 2005CHROMAT_FILE: MSMg01no294_b22.g1 PHD_FILE: MSMg01no294_b22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AACATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCTTGCTTTCTAACAGCTAACAGTTTAAGAGCTTTGTGGAGA
CTGGTTACAAACCTAGGTTAGATAATGAGTTAGTGACTGGAGGCTGGAGA
GATGGATCAGCTGGTTAAGAGTACTGACTGTTCTTCCAGAGGTCCTGAGT
TCAAATCTCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGAATCC
AATGCTCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTCACATACA
TAAAAATAAATAAAATATATTTTTTTAAAAAGTTAGTGAGCAGTTTAGCA
TGTCCTTTTACTCATTTTATTTTTTCCTACCGCCCCCCCGCCAGGCAAGC
AGAATGCTATTTGGAAAACTAAGGCAGCACCTCAATTTTGCAGTCAGTAT
GTGCAATTTAGTGAAAATTCATCTCAAAATAAAGGGGGCCTACGGGTGCA
GCCAGGGGTAAATCACTTGTTTAGCATGTAGGAGCCATCTAGGGCATAAG
CTTCAGCACTACTCTACTGAATCAGCTGTATTGTTTCTCTGTTTGTTTGT
TTGTTTGTTTGTTGCGCTAGAATCTTACTCCACGAACCCTGCTTTAATCC
CAGCACTCCAGAAGAAGAGACAAGCAGATATCTGTGAGTTCGAGGCCAAC
CTGGTCTACAGATCGAGTTCTAGGTT
NAAAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTAAGGATAGAAGCAGCA
GAAAGAAAACTGAAATGGACTGACAAAGAGACCTTGAACAAAGAACAAGT
GGGGTGAGCACAAGAAAAAGAGAGGGATGCATGCAACATGTGACCCAAAG
GGGAGTCACGAAAGGCAGGAGTGAAAGAAAAGCTAAGAGAAATAGCAACC
AGATAGATAAAACAGAGAGCCATAGCTAGTGAAGACAAAGCAGACCACAC
AGGCACCAGAGAAAGTGAAACAAAGCTCAAAGCTCTGCAAGAAAGAACAT
GCAGGAGAAACATGGGAATAGGTAATATTCTACTGCACACAGAAAAGACA
CACAAAGGAAAGAAGGAGACATGCAAAGGAAGGAAGAAATAGATGTAACA
AAGAATTAGACACACAAGGAAGAAGTAGATACACAAAGAAGAAGTAGATA
CACAAAACAAGGAAGACATAGACACACAAAGCAAGGAAGACAGACACACA
AAGCAAGGAAGAAATAGACACACAAAGCAAGGAAGAAATAGATGCAACAA
CGAATTAGACAACACAAGGAGACATAGACACACAAAGCAATGAAGAAATA
TATATACCAAAGAATTAGACACAATGCAAGGAAGAAATAGACACACAAAA
GCAAGGAAGAAATAGATGTAACAAAGAATTAGACCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_b22.g1 MSMg01no294_b22.g1 CHROMAT_FILE:
MSMg01no294_b22.g1 PHD_FILE: MSMg01no294_b22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:43 2005
         (295 letters)



>mm_chrX_100662097_100662791
          Length = 695

 Score =  561 bits (290), Expect = e-164
 Identities = 293/294 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actaaggatagaagcagcagaaagaaaactgaaatggactgacaaagagaccttgaacaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 actaaggatagaagcagcagaaagaaaactgaaatggactgacaaagagaacttgaacaa 260

                                                                       
Query: 61  agaacaagtggggtgagcacaagaaaaagagagggatgcatgcaacatgtgacccaaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaacaagtggggtgagcacaagaaaaagagagggatgcatgcaacatgtgacccaaagg 320

                                                                       
Query: 121 ggagtcacgaaaggcaggagtgaaagaaaagctaagagaaatagcaaccagatagataaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggagtcacgaaaggcaggagtgaaagaaaagctaagagaaatagcaaccagatagataaa 380

                                                                       
Query: 181 acagagagccatagctagtgaagacaaagcagaccacacaggcaccagagaaagtgaaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acagagagccatagctagtgaagacaaagcagaccacacaggcaccagagaaagtgaaac 440

                                                                 
Query: 241 aaagctcaaagctctgcaagaaagaacatgcaggagaaacatgggaataggtaa 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaagctcaaagctctgcaagaaagaacatgcaggagaaacatgggaataggtaa 494


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)