BAC Information

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BAC

Clone NameMSMg01-294L05
ChromosomeX (Build37)
Map Location 109,399,732 - 109,400,058
singlet/doubletsinglet
Overlap genenone
Upstream geneRps6ka6, EG664791, D030011N01Rik, LOC100038989, Tex16, LOC622570, 4933403O08Rik
Downstream geneEG385407, Apool, Satl1, EG623341, 2010106E10Rik, Zfp711, Pof1b, LOC623412, EG623428, LOC100039112, Chm, EG664918
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294L05.T7 (MSMg01no294_l05.b1)MSMg01-294L05.TJ (MSMg01no294_l05.g1)
ACCAG422806AG422807
length738745
length of high quality
(start - end)
334 (48 - 381)296 (76 - 371)
definitionCHROMAT_FILE: MSMg01no294_l05.b1 PHD_FILE: MSMg01no294_l05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:26 2005CHROMAT_FILE: MSMg01no294_l05.g1 PHD_FILE: MSMg01no294_l05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCATCTGAGCAAATGAACTTCTTATGGATGAATAAAAATGGTT
AGCCTTTCCTCAGCCACTACTGTCTTTCCACTACCTAGCCTATCCCCTAG
CGCACAATGGTCACCAAACACTACTCCCTTCCTGAGTTCTCTTTCTTTGA
GTAGCATTGGTAGAGGATGCCACTCTTACCTTTCAGCCATGCCCAAGTCT
CAACATTTCAAACTAATTTGAGTTGCAGATTTTACCCTCTTGAGATGTAT
ACAGATCATTTGTTTATGCTGGCTTCTGTCACGCACCATATTTGATTTCA
ACTCTACCTTTTCAGGGTTTTTTTCCCTCCACCCGCTCTAACTATCTGTC
TTTCCTTACTTACTCGGTAATGATCCTCTCTCTGGATCCTGGAGCCTGCT
GCAGCCTCCAAGGCCTCTATAAGAACCTTCCTGTTTCCTTGCCTCCTTCC
TCTTAGAGCTTCCTGCCTTGCAGTTTCCTTAATCTCTTCCGGGCCCCTGT
GACTTTGTCTCTTCTGTCTCTCAGTCCCACACAGCTTCTCCTGGGCTTTT
CTTCTGCCTCTTTAGCTCCCACTTGGCACTTATAGCAACTCCCTCTAGCA
GAGTTCATTTTGTGACCTTTCCTCTCTTCCACGAACTCAGAGTTTATTAA
ACCTTGCTCTGTTACTATAAACAGCTTGGCCTCAGTGC
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAG
AGAAGCACCCGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAA
ATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGAT
CAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAA
CACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAA
TCAGTCTGGCAGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCC
AGCAATACCTCTCCTCGGTTTTTATCCCCACCGCACGCCCCAACTGGTAA
GAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCA
GAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAA
ATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGA
ATTTATGAAATTCCTAGCCAAATGAATGGACCTGCAGGGCATCATCCTGA
GTGAGGTAACACATTCACAAAGGAACTCACAAAATATGTACTCACTGATA
AGTGGATATTAGCCCCAAACCTAGGATTCCCAAGATATAAGGTACAATTT
GCTAAACTCATGAAACTCAAGAAGAATGAAGACTGAATTGTGGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_l05.b1 MSMg01no294_l05.b1 CHROMAT_FILE:
MSMg01no294_l05.b1 PHD_FILE: MSMg01no294_l05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:26 2005
         (334 letters)



>mm_chrX_109399528_109400261
          Length = 734

 Score =  565 bits (292), Expect = e-165
 Identities = 319/328 (97%), Gaps = 2/328 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcatctgagcaaatgaacttcttatggatgaataaaaatggttagcctttcctc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcatctgagcaaatgaacttcttatggatgaataaaaatggttagcctttcctc 264

                                                                       
Query: 65  agccactactgtctttccactacctagcctatcccctagcgcacaatggtcaccaaacac 124
           ||||||||||||||||  || |||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agccactactgtctttttaccacctagcctatcccctagcgcacaatggtcaccaaacac 324

                                                                       
Query: 125 tactcccttcctgagttctctttctttgagtagcattggtagaggatgccactcttacct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tactcccttcctgagttctctttctttgagtagcattggtagaggatgccactcttacct 384

                                                                       
Query: 185 ttcagccatgcccaagtctcaacatttcaaactaatttgagttgcagattttaccctctt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttcagccatgcccaagtctcaacatttcaaactaatttgagttgcagattttaccctctt 444

                                                                       
Query: 245 gagatgtatacagatcatttgtttatgctggcttctgtcacgcaccatatttgatttcaa 304
           |||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||
Sbjct: 445 gagatgtatacagatcatttgtttatgctggcttttgtcacccaccatatttgattccaa 504

                                       
Query: 305 ctctaccttttcag-ggtttttttccct 331
           |||||||||||||| || ||||| ||||
Sbjct: 505 ctctaccttttcagaggcttttt-ccct 531


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 734
Length adjustment: 9
Effective length of query: 325
Effective length of database: 725
Effective search space:   235625
Effective search space used:   235625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)