Query= MSMg01no296_d08.b1 MSMg01no296_d08.b1 CHROMAT_FILE:
MSMg01no296_d08.b1 PHD_FILE: MSMg01no296_d08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:20 2005
(234 letters)
>mm_chr1_34250966_34251599
Length = 634
Score = 400 bits (207), Expect = e-116
Identities = 226/233 (96%), Gaps = 2/233 (0%)
Strand = Plus / Plus
Query: 1 tcctggaactcactgtgtagaccaggctggcctc--aatccgcctgcctctgcctcccga 58
|||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 199 tcctggaactcactttgtagaccaggctggcctcgaaatccgcctgcctctgcctcccga 258
Query: 59 gtgctgtgattaaaggcgtgcgccaccacacccggcgtattatatttttatagttcttaa 118
||||||||||||||||| ||| ||||||||||| ||| ||||||||||||||||||||||
Sbjct: 259 gtgctgtgattaaaggcatgcaccaccacacccagcgaattatatttttatagttcttaa 318
Query: 119 ttctccaaacagaatcactgtaggactttgaaatttgggggacaaacagaaatgaatgca 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ttctccaaacagaatcactgtaggactttgaaatttgggggacaaacagaaatgaatgca 378
Query: 179 taattttgttttctagtctaagctggctgttcgtcatgaagacttcttacaca 231
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 taattttgttttctagtctaagctggctgttcgtcatgaagacttcttacaca 431
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space: 140625
Effective search space used: 140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no296_d08.g1 MSMg01no296_d08.g1 CHROMAT_FILE:
MSMg01no296_d08.g1 PHD_FILE: MSMg01no296_d08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:20 2005
(235 letters)
>mm_chrX_79016332_79016964
Length = 633
Score = 199 bits (103), Expect = 1e-55
Identities = 208/251 (82%), Gaps = 23/251 (9%)
Strand = Plus / Minus
Query: 2 atattgttccaaggcacttattgaatctccatgactagatgaaaacaacaaccattagga 61
|||||||||||||| ||||| ||||||| |||||||||||||||| || |||||||||||
Sbjct: 522 atattgttccaaggaacttactgaatctacatgactagatgaaaataagaaccattagga 463
Query: 62 tgaacaattatacagtat---at---aatataa----aa-ataa-----ctttttgctta 105
| | || |||| | ||| || ||||||| || |||| ||| |||||||
Sbjct: 462 t--ataa-tata-aatataaaataaaaatataaatataatataaaatggcttcttgctta 407
Query: 106 caatttacaaaatgtattattattacaatctttgatctct-agtaacctgcaatcctggc 164
||||||||||||||| |||||||| ||| |||||| ||| | ||| || |||| |||
Sbjct: 406 caatttacaaaatgtgttattattgtaatatttgatttctga-taaacttcaatgctgtt 348
Query: 165 tgcatgaatccagcaagtttaaaattcagaaactgttttctaaaactttagagcacataa 224
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 347 tgcatgaatccagcaagtttaaaattcagaaactgttttctaaaactttagtgcaaataa 288
Query: 225 tttacaagtaa 235
|| ||||||||
Sbjct: 287 tt-acaagtaa 278
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 633
Length adjustment: 9
Effective length of query: 226
Effective length of database: 624
Effective search space: 141024
Effective search space used: 141024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
