BAC Information

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BAC

Clone NameMSMg01-296P22
ChromosomeX (Build37)
Map Location 110,602,343 - 110,602,633
singlet/doubletsinglet
Overlap geneDach2
Upstream gene2010106E10Rik, Zfp711, Pof1b, LOC623412, EG623428, LOC100039112, Chm, EG664918
Downstream geneLOC237016, EG664945, EG634881, LOC100039201, Klhl4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-296P22.T7 (MSMg01no296_p22.b1)MSMg01-296P22.TJ (MSMg01no296_p22.g1)
ACCAG424454AG424455
length738737
length of high quality
(start - end)
692 (45 - 736)291 (439 - 729)
definitionCHROMAT_FILE: MSMg01no296_p22.b1 PHD_FILE: MSMg01no296_p22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:33:20 2005CHROMAT_FILE: MSMg01no296_p22.g1 PHD_FILE: MSMg01no296_p22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:33:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGGGAAATACCGCCAAAGGTTGAGGAGATATTCTTGACCCAAAGTC
TTAAAACAGCAGCATTTCCAGCCCATTTGAAGAACATTAAAAATACTAGT
ATGGCTATAGTGGAGTAAGGGAAGAGAACTGGAAAGAGAACATACTGGTA
ATGAAGAAGTTTGTTTATACATATCGTTAGAGTCATCTTTAAGATTTTGC
CATGAACTTATATAATGGAGAGAGATTCACATGTAGGGTTTTAAGTAGGG
GTATAAAATGAGATAGATCATCACTTGAAAGTAAGGGTTAGAAAAGAGGT
CTGGAAAGGTGGCAACAGGAGGAAGGATTTATAGGGAAAATTTGAGATAG
CCATTGGAGTAACTAGGAGAATCTACTACTGAAAGAAGGCAGTTGTCATT
ACAAGCCCATTGATACTTATGCTCATAAATTTAAAAAGATCAATGAGATT
TTGTGTTTCTATTTTACCAGGTAGAACTGCCTGAATACTGATGCAAAGTC
GTTAGACAATCTAATTTTACAAGAGCTGTGGTTTTGTCATCGAGGTGCTT
TCATAACAAAGTAAAAGGCAAGACAGTTGAGTATAATTATCTTTGTAATA
GATAATTATAACACAGGAAAATGTACTGTAAGTTGTTGGATAGCATGATG
AGAGACAGTGAAAGATTAGAAATTGCAGGAAAGGTTCA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGTAACAGGATTAAGCACTGGCAG
TAGCCCGCTTTTTGTCATTTAGCCTACTGACACTTTGTGCAAGAGAACAT
TGAGAATTCTAAGCTCATCTAATGCTATTAATTTAGTATTTTACTCTGCA
ATCGATTTTCAAAAATGTCAGCATAAATAGGAAAATGTAAATATACACTA
GATTCCTTTTATTCCTATAAACAAAAATTTTAAATTTTAAAACCTGCTTT
TTTTCTGGATATTCAGTGTTCCAATATTATGCTACACTTGTTTACCATTT
CAGCTGTGTTTGTTTTANTTGTACCACCCCCCCCACCACATGCTATGTTA
CAAAGAGATGTACGTGCTACTAAACATATATATATATATAACTATCTCTG
GTACCTAAAACTTCCTAATTACAATATTGGCCACCCTGAAAGAAGAAATT
TTCTTTTTCACTGACATCATATTGAACTCATACTATCAAAAGGTCATCTT
TAACACTGTCTTCACCACAATGTTATATTTCAAGATTTAACATAATTATA
CTAATCAAAACTATATATACAAGTGTAAATTAATGAATTTATAGAAGGGC
GTAAATAGATAAATATTATAAAATTAATAAAATAATCCATATTTCTATTG
CAAATTAGCCAACGACTGTTGTCTTAACTAAGAAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no296_p22.g1 MSMg01no296_p22.g1 CHROMAT_FILE:
MSMg01no296_p22.g1 PHD_FILE: MSMg01no296_p22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:20 2005
         (291 letters)



>mm_chrX_110602214_110602904
          Length = 691

 Score =  524 bits (271), Expect = e-153
 Identities = 286/291 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   taactatctctggtacctaaaacttcctaattacaatattggccaccctgaaagaagaaa 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 taactatctctggtacttaaaacttcctaattacaatattggccaccctgaaagaagaaa 361

                                                                       
Query: 61  ttttctttttcactgacatcatattgaactcatactatcaaaaggtcatctttaacactg 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ttttctttttcaccgacatcatattgaactcatactatcaaaaggtcatctttaacactg 301

                                                                       
Query: 121 tcttcaccacaatgttatatttcaagatttaacataattatactaatcaaaactatatat 180
           ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 tcttcgccaaaatgttatatttcaagatttaacataattatactaatcaaaactatatat 241

                                                                       
Query: 181 acaagtgtaaattaatgaatttatagaagggcgtaaatagataaatattataaaattaat 240
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 240 acaagtgtaaattaatgaatttatagaagggcataaatagataaatattataaaattaat 181

                                                              
Query: 241 aaaataatccatatttctattgcaaattagccaacgactgttgtcttaact 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 aaaataatccatatttctattgcaaattagccaacgactgttgtcttaact 130


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)