BAC Information

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BAC

Clone NameMSMg01-297O05
ChromosomeX (Build37)
Map Location 19,083,233 - 19,083,566
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043098, EG628855, LOC385333, EG628871, LOC100043953, BC049702
Downstream geneLOC675558, LOC668995, LOC385336, Chst7, Slc9a7, LOC668277, LOC100043954, EG668996, Rp2h, LOC668283, Phf16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-297O05.T7 (MSMg01no297_o05.b1)MSMg01-297O05.TJ (MSMg01no297_o05.g1)
ACCAG425089AG425090
length722720
length of high quality
(start - end)
342 (39 - 380)597 (79 - 675)
definitionCHROMAT_FILE: MSMg01no297_o05.b1 PHD_FILE: MSMg01no297_o05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:26 2005CHROMAT_FILE: MSMg01no297_o05.g1 PHD_FILE: MSMg01no297_o05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGAATTCTCAC
CTGATGAATACCGAATGGCAGAGAAGCACTTGAAAAAATGTTCAACATCC
TTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCAC
ACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGC
GAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGAGTGCAGG
CTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAACTGGA
CATAGTACTACTGGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAG
AAGATGCCCCAACAGGTAAGAAGGACACATGCTCCACTATGTTCATAGCA
GTCTTATTTATAATACCCCCAACCTGGAAAGAACCTAGATGCTCCTCAAC
AGATGAATGGATACAGAAAATGTGGCACATCTACACAATGGAGTACTATT
TAGCTATTAAAAAGAATGACTTTATGAAATTCCTATCCTAATGGATGGAC
CTGGAGGGCATCATCCCGAGTGAGGTAACACATTTCCAAAGAAACTCACA
CCATATGTATTCACTGATAAGCGGATATTAACCCCTAATCTAGGATACCC
TAAGATATTAGATATAATTTGGTTAACCCATTGAACCCCTGAAGAATGAA
TATTGTACCGTGGACACTATGC
CCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAACACCCACACGAAACTAATGG
ATTTCATATTGGGTAGACTAGGTTGGAACCAGCTATAATTACTGTTGAAT
TTTAGTTATATATACTTTGTACTTTCTTAAGATACCAATGATGGAATATA
AGATTTAGTTAGTTTTTGAGACAGTATTTCACATAACCCAGGCAGTCTTT
GAACTTGATGTGAATCTGTCCTGACTAGGTTTTTTTGGTTTTGTTTTGTT
TATTTTGGGGGGTTTTCTTTTTGTTTGTTTTTTGGTTGTCTTTTTTTTCC
CCTATAGTTCTTTATGTAGAGCTGAGGCTTTGTGAACTTTTCATCATCCA
ATTTGTCATGTCCATTGCTGCGATTTCTGTTCATCTCACATTTGGGTAGT
CATGTTGGTGAGACTTTATAGGTGTAGCTTCTGATACTGGTAGAAGTCAC
AACTACAAAGCAAACTCCCTGATCCTCTGGCTCTTACAATCTTTCTGCTC
CCTTCTCTGCCTTGTTCTCTAAATCTGAGGCGAGAAAGTGTTTGGTAGAT
ATGTCCATTGAAATGATCAGAATTACCATACACATCTCAATAATAACTTT
AAAGATCAGTTACCACAATTATTCAATCAAAACCACAGACTGACTGAATG
GATGGAGAAATAAAATTTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no297_o05.g1 MSMg01no297_o05.g1 CHROMAT_FILE:
MSMg01no297_o05.g1 PHD_FILE: MSMg01no297_o05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:26 2005
         (597 letters)



>mm_chrX_19083233_19084229
          Length = 997

 Score =  600 bits (310), Expect = e-175
 Identities = 328/334 (98%), Gaps = 2/334 (0%)
 Strand = Plus / Minus

                                                                       
Query: 3   cacccacacgaaactaatggatttcatattgggtagactaggttggaaccagctataatt 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 cacccacacgaaactaatggatttcatattgggtagactaggttggaaccagctataatt 275

                                                                       
Query: 63  actgttgaattttagttatatatactttgtactttcttaagataccaatgatggaatata 122
           ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 274 actgttgaattttagttatatatactttgcactttctcaagataccaatgatggaatata 215

                                                                       
Query: 123 agatttagttagtttttgagacagtatttcacataacccaggcagtctttgaacttgatg 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 agatttagttagtttttgagacagtatttcacataacccaggcagtctttgaacttgatg 155

                                                                       
Query: 183 tgaatctgtcctgactaggtttttttggttttgttttgtttattttgggggg-ttttctt 241
           |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 154 tgaatctgtcctgattaggtttttttggttttgttttgtttattttgggggggttttcct 95

                                                                       
Query: 242 tttgtttgttttttggttgtctttttttt-cccctatagttctttatgtagagctgaggc 300
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 94  tttgtttgttttttggttgtctttttttttcccctatagttctttatgtagagctgaggc 35

                                             
Query: 301 tttgtgaacttttcatcatccaatttgtcatgtc 334
           ||||||||||||||||||||||||||||||||||
Sbjct: 34  tttgtgaacttttcatcatccaatttgtcatgtc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space:   579369
Effective search space used:   579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)