Query= MSMg01no301_d01.b1 MSMg01no301_d01.b1 CHROMAT_FILE:
MSMg01no301_d01.b1 PHD_FILE: MSMg01no301_d01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:32 2005
(727 letters)
>mm_chrX_160231890_160233016
Length = 1127
Score = 1292 bits (668), Expect = 0.0
Identities = 706/725 (97%), Gaps = 14/725 (1%)
Strand = Plus / Minus
Query: 5 gaattcacatagaacacagtagtagagcaaagagctagattaaatagagcaatcaaggaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852 gaattcacatagaacacagtagtagagcaaagagctagattaaatagagcaatcaaggaa 793
Query: 65 gcaagagtgtactttttacaataagtgcaaaggcccaaatctggacagtcactggaggct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 gcaagagtgtactttttacaataagtgcaaaggcccaaatctggacagtcactggaggct 733
Query: 125 tatatttctcttttccctgttatcccttctcctgttgttgggttgttaggcaggcattag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 tatatttctcttttccctgttatcccttctcctgttgttgggttgttaggcaggcattag 673
Query: 185 tagacttagagaccataaggcgaccccctcccttgcaatcagctttggatgccaccttcg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 tagacttagagaccataaggcgaccccctcccttgcaatcagctttggatgccaccttcg 613
Query: 245 gtttccttggtaacactagaaagtagagcatcacaatttcttctacttaagatttaaaaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 gtttccttggtaacactagaaagtagagcatcacaatttcttctacttaagatttaaaaa 553
Query: 305 aatgtaaaaaggtgtaagtatc----ttttctttgctgacgcccattatgggaaaactac 360
|||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct: 552 aatgtaaaaaggtgtaagtatcaggg----ctttgctgaggcccattatgggaaaactac 497
Query: 361 ttcttagtgaaaagaataaaatctgagtcctatttcttgtcctggtcagagacaggctgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ttcttagtgaaaagaataaaatctgagtcctatttcttgtcctggtcagagacaggctgt 437
Query: 421 tctgatttgcctctaacattgcttaatattattgcctcccttaagagttaatccagctga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 tctgatttgcctctaacattgcttaatattattgcctcccttaagagttaatccagctga 377
Query: 481 gcccaacaatcccctaccagggacgcttaggaaagctgattcactagaaggcacactaag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gcccaacaatcccctaccagggacgcttaggaaagctgattcactagaaggcacactaag 317
Query: 541 gagatgagaggactgactaatcatcctctttactcccgagtcccaccctcagtgcagttg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gagatgagaggactgactaatcatcctctttactcccgagtcccaccctcagtgcagttg 257
Query: 601 cttgtcaatcttcacttccaagcctgttcagttttctgagttctcanaaagtaaacaaaa 660
||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||
Sbjct: 256 cttgtcaatcttcacttccaagcctgttcagatttctgagttctcaaaaagta---aaaa 200
Query: 661 caaaacaaaacaaaacaaaaaagcaaaaaaaaaacctctccccaccctcctttatctcct 720
|||||||||||||||||||||| | |||||||||||| ||||||||||||||||||| |
Sbjct: 199 caaaacaaaacaaaacaaaaaacc--aaaaaaaacctc-ccccaccctcctttatctctt 143
Query: 721 cttta 725
|||||
Sbjct: 142 cttta 138
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 727
Length of database: 1127
Length adjustment: 10
Effective length of query: 717
Effective length of database: 1117
Effective search space: 800889
Effective search space used: 800889
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no301_d01.g1 MSMg01no301_d01.g1 CHROMAT_FILE:
MSMg01no301_d01.g1 PHD_FILE: MSMg01no301_d01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:32 2005
(650 letters)
>mm_chrX_160075163_160076212
Length = 1050
Score = 1224 bits (633), Expect = 0.0
Identities = 639/641 (99%)
Strand = Plus / Plus
Query: 1 aaaacctagaatagactgatgtctgagctcaaagcagtaagggaagagaaatgtcctctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaacctagaatagactgatgtctgagctcaaagcagtaagggaagagaaatgtcctctt 260
Query: 61 aacctaatgacaagaacaacaaaaatgtcaggttttattttcttatccaaggcctcaagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacctaatgacaagaacaacaaaaatgtcaggttttattttcttatccaaggcctcaagt 320
Query: 121 gactggccaaggaaaactcacatcaggaaagagaatatgttttacccagtgcaccagttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gactggccaaggaaaactcacatcaggaaagagaatatgttttacccagtgcaccagttc 380
Query: 181 aaatgttaatcttatctcaaacaccctcactggcacatttagaatcacgtttgatcaaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaatgttaatcttatctcaaacaccctcactggcacatttagaatcacgtttgatcaaac 440
Query: 241 gtttgctgcagtcaaagcaataaataaaattaaccatcacaacagcagacatgtgcctct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtttgctgcagtcaaagcaataaataaaattaaccatcacaacagcagacatgtgcctct 500
Query: 301 tcagaatacataattggatgcccccttagttggcttcacccatattaagattgtatggat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcagaatacataattggatgcccccttagttggcttcacccatattaagattgtatggat 560
Query: 361 agcgaagctcttgagcattgccattggaagaggcagttaatacttccagacactcttatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agcgaagctcttgagcattgccattggaagaggcagttaatacttccagacactcttatt 620
Query: 421 ttcttccactcacgctgtccgtccttcgtcccaccagagtggaaagttaattgacttcaa 480
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 621 ttcttccactcacgctgtccgtccttcttcccaccagagtggaaagttaattgactttaa 680
Query: 481 atatattttgccctgagtaataacttggaaatgtgcttgcttgcctaagaagctcatcta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atatattttgccctgagtaataacttggaaatgtgcttgcttgcctaagaagctcatcta 740
Query: 541 tgctttgggttggccccagtaggactgaactcatacgtgcacataatattctgtcagcaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgctttgggttggccccagtaggactgaactcatacgtgcacataatattctgtcagcaa 800
Query: 601 tcaacctgatataaaccatgtagggctctaaactccagaag 641
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tcaacctgatataaaccatgtagggctctaaactccagaag 841
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space: 665600
Effective search space used: 665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
