Query= MSMg01no301_d14.b1 MSMg01no301_d14.b1 CHROMAT_FILE:
MSMg01no301_d14.b1 PHD_FILE: MSMg01no301_d14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:34 2005
(631 letters)
>mm_chrX_49680383_49681413
Length = 1031
Score = 1147 bits (593), Expect = 0.0
Identities = 620/631 (98%), Gaps = 5/631 (0%)
Strand = Plus / Minus
Query: 5 gaattccccatactatctccaaggatacagcagacatctagcattcttcatagaatctaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 gaattccccatactatctccaaggatacagcagacatctagcattcttcatagaatctaa 689
Query: 65 gtctaaaaagccagttgtgtggttggaccatgctatttctgttgcccgtaatgatttgct 124
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 688 gtctaaaaagccagttgtgtggttggaccatgctatttctgttgcccataatgatttgct 629
Query: 125 gtcctcatctgtaaaatcagggggttggatctggactgtgtaatcacccaaatccttttg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 gtcctcatctgtaaaatcagggggttggatctggactgtgtaatcacccaaatccttttg 569
Query: 185 aagtcaacactccttgttcatccccttagtaaggtgttgcatataatactgaccacttct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 aagtcaacactccttgttcatccccttagtaaggtgttgcatataatactgaccacttct 509
Query: 245 gtgtgttcaaaacatctaatgaatccttttgtacacaataagtgtcatcctctcagaggt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 gtgtgttcaaaacatctaatgaatccttttgtacacaataagtgtcatcctctcagaggt 449
Query: 305 gactacactggttttcacgctgctgtacctaactaaggacactcaatttatatctttttt 364
|||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||
Sbjct: 448 gactacactggttttcaccctgctgtacctaattaaggacactcaatttatatc-ttttt 390
Query: 365 ttaaagatttatttatttattatatgtaagtacactgtagctgtcttcagacactccaga 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 ttaaagatttatttatttattatatgtaagtacactgtagctgtcttcagacactccaga 330
Query: 425 agagggcgtcagatcttgttactgatggttgtgagccaccatgtggttgctgggatttga 484
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 329 agagggcgtcagatcttgttacagatggttgtgagccaccatgtggttgctgggatttga 270
Query: 485 actccggaccttcggaagagcagtcgggtgctcttacccactgagccatctcaccagctc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 actccggaccttcggaagagcagtcgggtgctcttacccactgagccatctcaccagctc 210
Query: 545 ccaatttatatcttcaaagataaagtagtactctcttca----aaatcattaagtgagca 600
|||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 209 ccaatttatatcttcaaagataaaatagtactctcttcaaatgaaatcattaagtgagca 150
Query: 601 taatgcttggaatgtgtttatgttacccatt 631
||||||||||||||||||||||||||||||
Sbjct: 149 caatgcttggaatgtgtttatgttacccatt 119
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space: 634041
Effective search space used: 634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no301_d14.g1 MSMg01no301_d14.g1 CHROMAT_FILE:
MSMg01no301_d14.g1 PHD_FILE: MSMg01no301_d14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:34 2005
(194 letters)
>mm_chrX_49521900_49522493
Length = 594
Score = 362 bits (187), Expect = e-104
Identities = 193/197 (97%), Gaps = 4/197 (2%)
Strand = Plus / Plus
Query: 1 atatatgtatatatatacatattttgagcatatcttcttttattgaattcctctcccact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atatatgtatatatatacatattttgagcatatcttcttttattgaattcctctcccact 260
Query: 61 gaacttttttttttcttctcataaagttcctctcctgctttgatttctcttgtggcatgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaacttttttttttcttctcataaagttcctctcctgctttgatttctcttgtggcatgc 320
Query: 121 agtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt----cccactgcatttaat 176
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 agtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcccactgcatttaat 380
Query: 177 tagggatgcctgcatga 193
|||||||||||||||||
Sbjct: 381 tagggatgcctgcatga 397
Score = 60.7 bits (31), Expect = 6e-14
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 130 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 160
|||||||||||||||||||||||||||||||
Sbjct: 194 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 164
Score = 60.7 bits (31), Expect = 6e-14
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 128 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 158
|||||||||||||||||||||||||||||||
Sbjct: 194 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 164
Score = 60.7 bits (31), Expect = 6e-14
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 126 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 156
|||||||||||||||||||||||||||||||
Sbjct: 194 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 164
Score = 58.7 bits (30), Expect = 2e-13
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 125 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 154
||||||||||||||||||||||||||||||
Sbjct: 193 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 164
Score = 58.7 bits (30), Expect = 2e-13
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 132 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 161
||||||||||||||||||||||||||||||
Sbjct: 194 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 165
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 53
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 6
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space: 108996
Effective search space used: 108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
