BAC Information

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BAC

Clone NameMSMg01-302H11
ChromosomeX (Build37)
Map Location 73,273,803 - 73,427,851
singlet/doubletdoublet
Overlap genenone
Upstream geneGab3, Dkc1, Mpp1, EG547412, 4930428E23Rik, EG667190, F8, LOC572559, LOC667218, Fundc2, Mtcp1, Brcc3, LOC667496, Vbp1, Rab39b, EG635243, Pls3, LOC635275, EG635295, LOC667537
Downstream geneLOC385472, LOC100041147, EG238829, Magea7, 4930428D18Rik, EG544974, 4930468A15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-302H11.T7 (MSMg01no302_h11.b1)MSMg01-302H11.TJ (MSMg01no302_h11.g1)
ACCAG428347AG428348
length730727
length of high quality
(start - end)
312 (45 - 356)178 (243 - 420)
definitionCHROMAT_FILE: MSMg01no302_h11.b1 PHD_FILE: MSMg01no302_h11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:06 2005CHROMAT_FILE: MSMg01no302_h11.g1 PHD_FILE: MSMg01no302_h11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,273,803 - 73,274,110)(73,427,674 - 73,427,851)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTTTCATTTGATCATCTTTGATTCAAATGTGGACCATATTCTCCT
GTCAACCTCTACTGTTCTTGCCATGGAAGAATCCCTAACTGTTTCACATT
GCTTTGAATATAGGAATTACATGTCTTTGTCAGTTAAAATTTCTCACACT
GGGCAGAATGTTACGTGACATGGCCAAATCTAAACAAAACTATGTTCATT
TTCTGTTTGTGTAACTAAATCATGAAGCTCGGTATTTATAAAGAAAGGGA
AATTCTTTTGCTCACAGTTTTGGATATTTGTTGACCTCATATCTTTTACC
TCTGTTCTTAGNGTAGGTTCNGAAACCTGACCCCTGATGAGAAAATAAGG
TAAAAGGGGAGATTATGAGATAAGAAGCTAGNGATATGACTTGGGAGATG
TGCTATAATTACATCTAAAAATGGAGATGGGATGTAAGCTCATTTAAAAC
AAACAATATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCT
CTCTTTCTGTTTTTTCCTCTCTTTTTCTCCTACTCTCAATTTCTGTCTCA
GTCTGTCCTGCATCTTAATAATCATCTTGCCTTTACCCCTTTGAAAATAT
AATTTTAGGCTTGAGCTTCCCAGCTAGGCTTACATTTCTTAATCCCGGGA
AATAATTATTATGCCATGAAAAGTATTGTN
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTTCCTTCTGTTGTGAGGCCCCTGCTCT
AAACAGACTTCTGCCAAGACATCAGGACAAGTTTATTATTTTTCTGGGTG
TGTCTGTCTGTTGCCCTTTAAGAGACTGTGAAATCCTCACTCTCTTGAAG
CTTACAATGCAAAAAAAGAAGAGCCAGACAGCACATGAATAAATCTATGA
TTGAATTGTGCTCTAACGAGGGCCTGTGAGGAGTAGAACCAGAGCAGCTG
GTGAGACCATTCAGTAAGTAAGGGTGTGCTGCACAAGTAGGAGAACATGG
GTTCAACTCCCAGAACTGAGGTAGAAAGCTGGCTGTTGTGGTCCTGGGTG
CACCTATAATCCTGGGGCTGGACAGGTGGATAAAGGAAGATCACTGGCAC
TTGTTGAGCTCAGTTGGTGAGCTCAAGATTCAGTGAGAAATTTCATCTCA
AAATAATATGGTACAAAGTTACAGAGGCAGATTTCTGCAAAGCAGGTACT
GGCTCAAAGCACACGTGAAGATACTCATAGACACAGAACATATGCTTAAA
AAGAAAGAATCATTGAGGGGTGGGCCTACTTTCTGTTGGCCGGTACAGAA
ATTTGGTTTGAGCTGGAGGGATGACATATTCACTTTCCTCAGATGCTTAA
CCCAGAGGAGAGACCAAGGCCCGACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no302_h11.b1 MSMg01no302_h11.b1 CHROMAT_FILE:
MSMg01no302_h11.b1 PHD_FILE: MSMg01no302_h11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:06 2005
         (312 letters)



>mm_chrX_73273599_73274310
          Length = 712

 Score =  580 bits (300), Expect = e-170
 Identities = 306/308 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttttcatttgatcatctttgattcaaatgtggaccatattctcctgtcaacct 64
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 205 gaattctttttcatttgatcatctttgattcaaatgtggaccaaattctcctgtcaacct 264

                                                                       
Query: 65  ctactgttcttgccatggaagaatccctaactgtttcacattgctttgaatataggaatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctactgttcttgccatggaagaatccctaactgtttcacattgctttgaatataggaatt 324

                                                                       
Query: 125 acatgtctttgtcagttaaaatttctcacactgggcagaatgttacgtgacatggccaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acatgtctttgtcagttaaaatttctcacactgggcagaatgttacgtgacatggccaaa 384

                                                                       
Query: 185 tctaaacaaaactatgttcattttctgtttgtgtaactaaatcatgaagctcggtattta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tctaaacaaaactatgttcattttctgtttgtgtaactaaatcatgaagctcggtattta 444

                                                                       
Query: 245 taaagaaagggaaattcttttgctcacagttttggatatttgttgacctcatatctttta 304
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 445 taaagaaagggaaattcttttgctcacagttttggagatttgttgacctcatatctttta 504

                   
Query: 305 cctctgtt 312
           ||||||||
Sbjct: 505 cctctgtt 512


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no302_h11.g1 MSMg01no302_h11.g1 CHROMAT_FILE:
MSMg01no302_h11.g1 PHD_FILE: MSMg01no302_h11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:06 2005
         (178 letters)



>mm_chrX_73427474_73428051
          Length = 578

 Score =  329 bits (170), Expect = 7e-95
 Identities = 176/178 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atctatgattgaattgtgctctaacgagggcctgtgaggagtagaaccagagcagctggt 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 378 atctatgattgaattgtgctctaaggagggcctgtgaggagtagaaccagagcagctggt 319

                                                                       
Query: 61  gagaccattcagtaagtaagggtgtgctgcacaagtaggagaacatgggttcaactccca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gagaccattcagtaagtaagggtgtgctgcacaagtaggagaacatgggttcaactccca 259

                                                                     
Query: 121 gaactgaggtagaaagctggctgttgtggtcctgggtgcacctataatcctggggctg 178
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 258 gaactgaggtagaaagctgggtgttgtggtcctgggtgcacctataatcctggggctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 178
Length of database: 578
Length adjustment: 8
Effective length of query: 170
Effective length of database: 570
Effective search space:    96900
Effective search space used:    96900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)