BAC Information

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BAC

Clone NameMSMg01-303B10
ChromosomeX (Build37)
Map Location 19,083,329 - 19,083,566
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043098, EG628855, LOC385333, EG628871, LOC100043953, BC049702
Downstream geneLOC675558, LOC668995, LOC385336, Chst7, Slc9a7, LOC668277, LOC100043954, EG668996, Rp2h, LOC668283, Phf16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-303B10.T7 (MSMg01no303_b10.b1)MSMg01-303B10.TJ (MSMg01no303_b10.g1)
ACCAG428780AG428781
length740768
length of high quality
(start - end)		695 (46 - 740)243 (78 - 320)
definitionCHROMAT_FILE: MSMg01no303_b10.b1 PHD_FILE: MSMg01no303_b10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:54 2005CHROMAT_FILE: MSMg01no303_b10.g1 PHD_FILE: MSMg01no303_b10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAACTGGGAAACTTGACAAAAAGCCTTACAAATAGGTTATAGTATC
AGAAAATAGAATATTAGGACCTGAAGATCAATAAGCGGATCTAGAAAAAT
AAGCGTGGAATATGAACAATTTAAAATACTACAAGAAAGGAACACAGAAG
AAATGTGAGATGCCATGAAAAAAAAATTTTAAATTATAGGCATAGATGAG
GGAGAAGAATCTCAAGTTTAATAGGATGGACCAGCTTATCAGTAAGGTCA
TAGAAAAAATGAAAGGTAAACCTATGTAGATATAAGACACATACTGAACA
CCAAATAGACAAGACAAGAAAATCTCCACATCCTCATAGTATATTATAGT
TAAAATACGAACTGTACATAACAGAAAATGTATTGAAAGCTGAAAGAGAA
AAATAAGTATAAGTCACATATAAAAGAAAACCCATCAGAATACAGCTGAT
TTCTCAATGGCAACTTTGAAAGCCAGAAAAGCCTGGAGCAATGCATTCTA
GTCCTTAAAGTCTCTGATGGAGGCCTAGATTAATATACTCAGTAAAACTA
GCTTCCCATACTAATGGAGACAGAAAAACTTTCCAGAACATAAACACACC
TTAAAAGGTTTTTTGTCTTTGTTTTGTTTTGGTTTGGTTTGGTTTATATT
CAGGAAACCAAACAAAATACAAGAAGTATTTTTTTTCTGA

CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAACACCCACACGAAACTAATGGA
TTTCATATTGGGTAGACTAGGTTGGAACCAGCTATAATTACTGTTGAATT
TTAGTTATATATACTTTGTACTTTCTTAAGATACCAATGATGGAATATAA
GATTTAGTTAGTTTTTGAGACAGTATTTCACATAACCCAGGCAGTCTTTG
AACTTGATGTGAATCTGTCCTGACTAGGTTTTTTTGGTTTTGTTTTGTTT
ATTTTGGGGGGTTTTCNTTNTGTTTTTTTNNNNNNNNNNNNNNTTTTTTT
NTTTTNNNTTTTTTTTTTTTTTTTTTTNNTNNTTNNNTTTTTTTTTTNNT
TTTTNTTTTTTTTTTTTTTNCCCCCCCCCCCTCTCTTCCTCTTTCTCCCT
TTTTTTCTCCCTCCCTCTCTTTTCTTTTTTCCCTTCTCCCCTCCCCCCCT
TTCTTTTTTTTTCTTCTTTCCCCCCCTCTTTCCCTCTCCTTTCTTCCTTT
TCCCCCCTTCCTTTCCTTCCTTTTTTCCCTCCTCTTTCTTTTCTTCCTCC
CCCCCTTCTCCTCCCCCCTCTCTTTCCCTCTCTTCTCCTCCCTTCTTCTC
TCCTTCCCCTCCTCTTCCCCCCCCCTCTCTCCCTTCTCTCTCCTTTTCTC
TTCCCCTCCTTCTCTTCCCCTTTTTTTTCCCCCCCCTCTCTTTTTCTCCC
CCCTTCTCTTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no303_b10.g1 MSMg01no303_b10.g1 CHROMAT_FILE:
MSMg01no303_b10.g1 PHD_FILE: MSMg01no303_b10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:54 2005
         (243 letters)



>mm_chrX_19083233_19083875
          Length = 643

 Score =  429 bits (222), Expect = e-125
 Identities = 234/238 (98%), Gaps = 1/238 (0%)
 Strand = Plus / Minus

                                                                       
Query: 3   cacccacacgaaactaatggatttcatattgggtagactaggttggaaccagctataatt 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 cacccacacgaaactaatggatttcatattgggtagactaggttggaaccagctataatt 275

                                                                       
Query: 63  actgttgaattttagttatatatactttgtactttcttaagataccaatgatggaatata 122
           ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 274 actgttgaattttagttatatatactttgcactttctcaagataccaatgatggaatata 215

                                                                       
Query: 123 agatttagttagtttttgagacagtatttcacataacccaggcagtctttgaacttgatg 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 agatttagttagtttttgagacagtatttcacataacccaggcagtctttgaacttgatg 155

                                                                     
Query: 183 tgaatctgtcctgactaggtttttttggttttgttttgtttattttgggggg-ttttc 239
           |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 154 tgaatctgtcctgattaggtttttttggttttgttttgtttattttgggggggttttc 97


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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